Gene Sfri_0435 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0435 
Symbol 
ID4278412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp481032 
End bp483209 
Gene Length2178 bp 
Protein Length725 aa 
Translation table11 
GC content41% 
IMG OID638133193 
ProductABC transporter related 
Protein accessionYP_749135 
Protein GI114561622 
COG category[V] Defense mechanisms 
COG ID[COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain 
TIGRFAM ID[TIGR03375] type I secretion system ATPase, LssB family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCTATAA CTGCGTCTAA CAAAAGTGAG CAGTGGACGA TCTCTGCTTC CCAGCGGGTA 
ACCGTCGATC CATTACTCGA TTGTTTGGTT TTATTAACTG AACATTTTGG AAGTCCTTGC
TCAATAGATT CTCTTGCGGC AGGTCTTCCT TTGTCTGGTG CAGTCATTAC GCCGGATTTA
ATCCCTCAAG CTGCAGCCAG AGCTGGACTT TCAGCTAAGT TATCACGCAA AGATTTAAAT
CAAATTTCTG ACATATTATT GCCTTGTATC TTATTATTAA AAGATAAAAA GGCCTGTATT
CTAAGAAAAA TCGATCTAGA GCAAGACCAA GCCGTTATAC AATTACCTGA AACGGGCGGC
GAAGAGACTC TGACAATTGA AGGCTTAGAA ACCTTATATG TAGGTTACTT ATTTTTAGTT
AAACAAGATT ACCGTGGTGA CAAAAGTTTT GATGTTCACC TGCATGACAG CAGTACGCAT
TGGCTGCTAC AAAGTATTAA AGACTCTGCT CCTATTTACC GCGATGCACT TATAGCCTCA
GTATTGGTCA ACCTGTTTGC ATTGGTTTCA CCACTATTTA TTATGAATGT CTATGATAAA
GTGGTGCCCA ATCTTGCATT TGAATCACTA TGGGTTTTAG CCATTGGGGC AAGCATTGCC
TACATATTCG ACTTTATCAT GCGCCAATTA CGCAGCTATT TAATCGATAT CGCAGGTAAA
AAAGTCGACA TTATTGTTTC TTCAAAATTA TTTGCAAAAG CCATTGGTAT TCCATTATCT
AAACGCTCAC CAAGTGTCGG AGGTATGGCT AGGCAGCTAG GTGAGTTTGA CAGTATTCGG
GAGTTTTTAA CCTCCGCAAC CATTACTGCG TTAGTTGATT TACCATTTGC ATTACTATTC
GTGATCATCA TTTATATTGT TGCTGGCGAT TTAGCCATTA TTCCGGTGAT TGGCAGCTTA
GTAATTATTG CAGTCACCTT TTATCTACAA CCTAAACTGA AACAAGCAAT TGAAGAAAGT
AATCGCTTTG CCAGTTTAAA GCATGGCCAT TTGATTGAAA GTTTAACCGC GTTAGAGTCA
ATTAAAGCCA ATGGTGCCGA AGGATTAGTA CAAAAAAGCT GGCAACAAAT GATTGGCCAT
ACAGCCAATT GGCAACTCAA AACCAAAAAA CTGTCTAACT ATGTCAGCCA TATTGCTAAT
TTTATGGTGC AATTAACCGT TGTCCTAGTG GTGATATTAG GAGTGTATCG ACTCGCTGAA
AACGAAATAT CCATGGGTGG GATCATTGCT GCGGTAATGC TATCTAGCCG AGCGATATCT
CCGATGGCTC AATTAGCAGG GTTAATTACT CGAGGTAATC ATACCATCAG CTCACTGCGC
CAATTAGACG CCATTATGGA ACAAGAAGAT GAGTTTGAAG ACAAAGGAAA TCTAGCCAGC
AAAGAACGAT TTATGGGAAA AATTGAAGCT GACAATATCA GTTTTAGCTT CCCTAGCTCC
GAAAAACCAA GTTTACACCC TTTATCAATA CAGATTAATC CCGGTGAGCG TATTGCCATT
ATCGGCCGTA ATGGCTCAGG TAAAAGCACT CTAGCCAAAT TACTACTCGG ACTGTACAAA
CCGACTCAAG GTAGCCTGCG CTATGATGGC CTAGATGCAG GACAAATTCA CCCAAGCGAT
CTTAGACGTA ACTTTGGCTA TTTACCTCAA GACGTCACCT TGTTTCACGG TACTATTCGC
GACAATATTT TATTCGGTTC TCGGCAAGTG ACTGAACATC AGTTAATAAG AGCTATCCAG
CTTTCTGGTG TCAGTATGTT TACTAACCTA GAGTCCGAAG GCTTAGATCA ACAAGTTGGT
GAAGGAGGCT TGTCACTCAG TCGTGGCCAA CGGCAAACCG TCGCCTTAGC CAGAGCAACA
TTGAATGATC CGTCGATATT ATTAATGGAT GAACCGACTG CCAGCTTAGA TGCTAGAGCA
GAAAAACAGT TTATTCGCTC AATGCAACTG GTTAGTCGCG ACAGAACATT ATTACTCATT
ACCCATAAGA TGCATTTATT AAATCTAGTC GATCGCATTA TTGTGCTCGA ACGTGGTCAT
ATAGTGGCTG ATGGTCCTAA AGATGAAGTC CTAGCTAAAC TCAATGCAGG GACAATTGCT
GGAGCCCAAA ACTCATGA
 
Protein sequence
MPITASNKSE QWTISASQRV TVDPLLDCLV LLTEHFGSPC SIDSLAAGLP LSGAVITPDL 
IPQAAARAGL SAKLSRKDLN QISDILLPCI LLLKDKKACI LRKIDLEQDQ AVIQLPETGG
EETLTIEGLE TLYVGYLFLV KQDYRGDKSF DVHLHDSSTH WLLQSIKDSA PIYRDALIAS
VLVNLFALVS PLFIMNVYDK VVPNLAFESL WVLAIGASIA YIFDFIMRQL RSYLIDIAGK
KVDIIVSSKL FAKAIGIPLS KRSPSVGGMA RQLGEFDSIR EFLTSATITA LVDLPFALLF
VIIIYIVAGD LAIIPVIGSL VIIAVTFYLQ PKLKQAIEES NRFASLKHGH LIESLTALES
IKANGAEGLV QKSWQQMIGH TANWQLKTKK LSNYVSHIAN FMVQLTVVLV VILGVYRLAE
NEISMGGIIA AVMLSSRAIS PMAQLAGLIT RGNHTISSLR QLDAIMEQED EFEDKGNLAS
KERFMGKIEA DNISFSFPSS EKPSLHPLSI QINPGERIAI IGRNGSGKST LAKLLLGLYK
PTQGSLRYDG LDAGQIHPSD LRRNFGYLPQ DVTLFHGTIR DNILFGSRQV TEHQLIRAIQ
LSGVSMFTNL ESEGLDQQVG EGGLSLSRGQ RQTVALARAT LNDPSILLMD EPTASLDARA
EKQFIRSMQL VSRDRTLLLI THKMHLLNLV DRIIVLERGH IVADGPKDEV LAKLNAGTIA
GAQNS