| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0429 |
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| Symbol | |
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| ID | 4278406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 470901 |
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| End bp | 473525 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638133182 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_749129 |
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| Protein GI | 114561616 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATACTG CAATAAGTCA CTCAATAGCT TCTCCACGAG TCGAGCATCT GCAAAAAAGG
ATAGCTCGTT TAAAGCGTTT GGCTAAAAAA TATAAGCGTT CTGAAATTAT TCAAAACGCT
TTACTGGGTA TTTCCAATAT TGCGACCCAG GTCACTTCTC TTGATGATTT TTATCAACGA
GTACACTTAC ATCTGCAGCA ACTTATCCCT GCTGAGAACT TTTTTATTGC CTCTCAAGAC
CCTAAAACCG GACTGACGAG TTTACCTTTT TTTGCCGACC AACAAGATTC TCACCCAACG
GAACTCTACC CAGACCAAGA AATATCGGCA TTACTCAATA GTGGCTTAAC AGGTTATGTG
CTCCGTAATG GCACACCTTT ATTATGCGAC GATATTAAGT TTAATGAATT GATCGCCAGT
GGCGATATTA AAAGTCTAGG CTCTCCAAGT CACCAATGGC TCGGTGTCCC CATCAAGAAC
CAGGAAATCG TCAGTGGTGT ACTTGTTGTG CAAAGCTATA ACGAAGCCAA TACTTACGGT
GAACTTGAAT TAGAATTAAT GGGTTTCATT TGTCATCATA TTTCTGGGGT TATGGAACGG
CTTGAGCATC ATGAACAGCT AGAACAAGCT ATTGTTGAAC GCACTAAAGA ACTCAGCCAG
GCTTATGAAA AAGTCAAAAA AGAAATAACT GAGCGCGTTA AAGCCGAAAA ATTACAAAAA
GCTTTATTCG AAATTGCCGA TCTATCTGCA TCAAATGTAC TCCAACAAGA CTTCTATTTA
CGACTTCACA CTATTATGAG TCAATTAATA CCGGCTGATA ACTGCTTTAT CTCATTGATA
AACGATAACA ATATGTTGTC ATTTCCTTTT TATGTTTCGC AGATGACAAC CGAATATCCA
GCCTCTCGTC CTATGCAGGA TGGGCTAACA GAATACATTC TAGAACATAA GTTGCCTCGG
CTCTTATCCT CTAAAGATAT CGCTGATATG GTTGCTAATG GCGAAATATA CGCAAAATCT
CCAGAATTGA ACAAAACCGA TAGAATGCAT CAATGGATAG GCATTCCGCT GATCATTAAT
GGTGATATTG CTGGTGCGTT AACGATTTAT AGCTTGGATG ACGCTCATAT TTATCAATTT
AAAGATCTAG AGCTACTGAC ATTCGTATCC CAACATATGG CCAACGCTAT TGAGCGTAAA
TTGGCGACTG AATCGCTCAA AAACAGCCAT GAGCAGCTAG AAGATAAGGT GGTTAAACGC
ACTAAAGCAC TCGCTGAACT GAACAACAAT CTTCAACAAG AAATCAATCA GCGCCGTAAG
ATTGAAAATC AGCTCTTACA CGATGCTCAG CATGATGGGC TGACTGGTTT ACCCAATCGC
AGCTATTTAA TGGAACGATT ATCACAAGCA TTAAAACACT TGCGCCGACA TGGATTAGAT
CAATTTGCAT TATTATTTAT CGATCTTGAT CGGTTCAAAG TGATCAATGA TTCTTTTGGT
CATCTCGAAG GCGATCGCTT TTTAATTGAA ACCGCACAAC GTATCAAGTC ATGTGTGCGT
GAAAACGACA CACTAGCAAG AATGGGCGGT GATGAATTTG TTATTTTGCT GGATTCTATT
AACGCCACGG AAGATGCTAT CGAGGTAAGT GATCGTATTT TACAAGCGTT GTCGATGCCC
TATCAGCTCG CCAAACAAGA GTTCATCTCA GGTGCCAGTA TCGGAATTGC ATTTAGTGGA
CGCAATAAAT TAGTCACCAG CGAGTCACTA CTACGTGATG CTGACGCTGC CATGTATCAG
GCTAAAGCCA ATGGTAAAGG TTGTTATGTT ATTTTTGACG ACAAACTCAG CGCACAATCT
AAGCTACAAC ATGAATTGGA AATTGATTTT AAAAAGGCCT TAGACCAACA AGAATTTAAA
ATTAACTACG TTGAAGTGGT CGATTTTACT ACTGGTGAAA TCATTGCCAT TGAACCTCAC
ATTGAGTGGC ATCATCCTGA GCAAGGCTTA ATTGAACATG GCAAGATGAA GCAGCTTGCC
GCACAATACC AGCTCACACT TAATATAGAC GGTTATATAT TTTCTAACTT AAATGAGCAA
TATCAGTTTC TTAAATCAAA ACATGGACCG TCTGTATACT TACATCTATC CATTAGCAGC
CAGCATATCA AAAATAAATT CGTATTACGC AATCTCAAAC AAACCATTAA AAGTAGTCAC
ATCAATCTTG AGAAATTAAT CTTATTCTTT AACGAAAAAG CACTAGTGCA AGACACCGAA
AATCACATCA ATGGCTTCGA GCTTATCTCG CAACTGGGCG TGCAAATCGG TATCGATGGC
TATGGCACAG GTTACAGCTC ACTCAGTTGC CTGAGTTTTT TACCAATTAA GGCATTAAAG
CTAGATGATG ACATCAGTAA GCATTTACTC AATGACAAAC AGTTACAATT AGTCAAAGCT
TACCAACTGA CGGCACAAAC ACTTAATTTC GATATGTACG CCACCACAGT AGACACACAA
CAACAAGTAA GGCAGTTTTT AGAACTTGGC TATGTACGTG GCCAAGGCCG AGCAATCAGT
AAATTATTTA ACGAAAAAAA AAAGCCACAT AAGGCCTGTG CCTAA
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| Protein sequence | MDTAISHSIA SPRVEHLQKR IARLKRLAKK YKRSEIIQNA LLGISNIATQ VTSLDDFYQR
VHLHLQQLIP AENFFIASQD PKTGLTSLPF FADQQDSHPT ELYPDQEISA LLNSGLTGYV
LRNGTPLLCD DIKFNELIAS GDIKSLGSPS HQWLGVPIKN QEIVSGVLVV QSYNEANTYG
ELELELMGFI CHHISGVMER LEHHEQLEQA IVERTKELSQ AYEKVKKEIT ERVKAEKLQK
ALFEIADLSA SNVLQQDFYL RLHTIMSQLI PADNCFISLI NDNNMLSFPF YVSQMTTEYP
ASRPMQDGLT EYILEHKLPR LLSSKDIADM VANGEIYAKS PELNKTDRMH QWIGIPLIIN
GDIAGALTIY SLDDAHIYQF KDLELLTFVS QHMANAIERK LATESLKNSH EQLEDKVVKR
TKALAELNNN LQQEINQRRK IENQLLHDAQ HDGLTGLPNR SYLMERLSQA LKHLRRHGLD
QFALLFIDLD RFKVINDSFG HLEGDRFLIE TAQRIKSCVR ENDTLARMGG DEFVILLDSI
NATEDAIEVS DRILQALSMP YQLAKQEFIS GASIGIAFSG RNKLVTSESL LRDADAAMYQ
AKANGKGCYV IFDDKLSAQS KLQHELEIDF KKALDQQEFK INYVEVVDFT TGEIIAIEPH
IEWHHPEQGL IEHGKMKQLA AQYQLTLNID GYIFSNLNEQ YQFLKSKHGP SVYLHLSISS
QHIKNKFVLR NLKQTIKSSH INLEKLILFF NEKALVQDTE NHINGFELIS QLGVQIGIDG
YGTGYSSLSC LSFLPIKALK LDDDISKHLL NDKQLQLVKA YQLTAQTLNF DMYATTVDTQ
QQVRQFLELG YVRGQGRAIS KLFNEKKKPH KACA
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