| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0428 |
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| Symbol | |
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| ID | 4278405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 468864 |
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| End bp | 470876 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133181 |
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| Product | ATP-dependent DNA helicase Rep |
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| Protein accession | YP_749128 |
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| Protein GI | 114561615 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01074] ATP-dependent DNA helicase Rep |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.12866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTCA ATCCAGGGCA AAATGAAGCC GTACATTATG TATCGGGTCC ATGCTTAGTG
CTCGCTGGCG CGGGGAGTGG TAAAACACGT GTAATCATTA ATAAAATTGC TTACTTAGTT
GAAAAATGTG GCTATAAAGC TCGCAATATT GCCGCAGTAA CCTTTACCAA CAAAGCCGCC
CGAGAAATGA AAGAACGTGT TGCTCAGTCG ATGGGCCGCA AAGAAGCGCG CGGATTATGG
ATTTCTACTT TTCATACATT AGGGCTCGAA ATTATTAAGC GCGAACATAA AGTGCTTGGG
CTTAAAGCGG GTTTTTCATT GTTTGATGAT CAAGACACTT TCGCGTTATT AAAAGAACTG
ACCGAAGATG AGTTAGATGA TGATAAAGAC CTGATTAAAT CTTTGGCATC AGCGATATCG
AATTGGAAAG GGGGATTAGT GATCCCTCAG CAAGCAAAAA GTATGGCAAA AGACGAGCAA
AGCCAATTAT TTGCCATGTT ATATGCTAGG TATGCTCAGC ATATGAAGTC CTATAATGCG
CTCGATTTTG ATGACCTAAT CTTAATTCCA ACATTATTGT TGCGAATGAA TGAAGAAGTG
CGCACCCGTT GGCAAACTAA AATTCAGTAC TTGCTGGTGG ATGAGTATCA AGATACCAAT
ACCAGCCAAT ATGAGTTAGT TAAGTTACTG GTGGGTGAGC GTGCACGTTT TACGGTGGTA
GGTGATGATG ATCAGTCCAT TTACTCTTGG CGTGGTGCAA AGCCACAGAA CCTAGTGTTA
TTAGGAACTG ATTTTCCAAG ACTTAAACTG ATCAAATTAG AGCAAAACTA TCGTTCAAGC
CAACGAATTC TCCGAGCAGC CAATATTCTG ATTGCTAACA ACCCTCACGT GTACGACAAG
GCGTTATTTA GTGAGTTAGC TTATGGTGAG CCATTAAGAG TATTAATTGC CGCTAACGAA
GAGCAAGAAG CTGAGCGAGT GGTGGCGGAG ATAATTCGAC ATAAGTTTGT TGGCCGAACT
AAGTTTGGTG ATTACGCCAT TTTATATCGA GGTAATCATC AATCTCGTTT ACTCGAACGA
TCGCTTATGA CCAACCGTAT TCCTTATAAG CTTAGTGGCG GTACTTCATT TTTCTCTCGT
GCAGAAATTA AAGATATCAT GGGGTATTTG CGTTTAGTGG TTAACCCGGA CGATGACAAT
GCTTTTTTGC GGGTGGTTAA CTTACCTAAG CGTGGTATTG GCCCCGCGTC GCTGGAGCGT
TTAGGTAATT TTGCCAATCA AAAGCATATA TCATTATTTG AAGCTATTTT TGATGTTGAA
CTCAATCATC ATTTAGCGCC TGCAGCGGTT AACTCTTTAT ATCAGTTTGG TAAGTTTATT
GTTGATACCG GTGAAGTCGC CTCGCGGGGT GAGCCTGTTG AAGCGATTAA ACAGCTTATT
CGTAAAATTA ATTACGAAGA TTATCTGTAC GAAACGAGTA CCAGCGCTAA AGCGGCTGAA
ATGAGGATGA AGAATATTTC GGAATTATAC CGCTGGGTTA CCGAAATGCT CGAAGGTGAT
GAGTTAGATG AACCTATGAC TTTGCCAGAA GTGGTTACTC GATTAACCCT GCGCGACATG
ATGGAACGCA ACAGCGAGGA TGAGGGTGGC GATCAAGTTC AGTTAATGAC GTTACATGCC
TCTAAAGGAC TGGAATATCC CTTTGTATTT ATGGTGGGCG TTGAAGAGCG TATTTTGCCG
CATCAGTCGA GCATTGACGA AGACAATGTT GATGAAGAAC GACGTCTGGC GTACGTGGGT
ATTACCCGTG CACAACGTGA ATTGTGGTTT GTAATATGCC GTGAACGTCG CCAGTTTGGT
GAAACGATGC GATGTGAGCC GAGCCGTTTT TTACTTGAGT TGCCTCAAGA TGATTTAATT
TGGGAAAACC GTAAGCCTGT TCAAACAGAA GAGCAGCGTG TCGAAACCAG TAAAAGTCAC
ATCGCCAACA TACGCGATAT GTTTAAAAAA TAG
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| Protein sequence | MKLNPGQNEA VHYVSGPCLV LAGAGSGKTR VIINKIAYLV EKCGYKARNI AAVTFTNKAA
REMKERVAQS MGRKEARGLW ISTFHTLGLE IIKREHKVLG LKAGFSLFDD QDTFALLKEL
TEDELDDDKD LIKSLASAIS NWKGGLVIPQ QAKSMAKDEQ SQLFAMLYAR YAQHMKSYNA
LDFDDLILIP TLLLRMNEEV RTRWQTKIQY LLVDEYQDTN TSQYELVKLL VGERARFTVV
GDDDQSIYSW RGAKPQNLVL LGTDFPRLKL IKLEQNYRSS QRILRAANIL IANNPHVYDK
ALFSELAYGE PLRVLIAANE EQEAERVVAE IIRHKFVGRT KFGDYAILYR GNHQSRLLER
SLMTNRIPYK LSGGTSFFSR AEIKDIMGYL RLVVNPDDDN AFLRVVNLPK RGIGPASLER
LGNFANQKHI SLFEAIFDVE LNHHLAPAAV NSLYQFGKFI VDTGEVASRG EPVEAIKQLI
RKINYEDYLY ETSTSAKAAE MRMKNISELY RWVTEMLEGD ELDEPMTLPE VVTRLTLRDM
MERNSEDEGG DQVQLMTLHA SKGLEYPFVF MVGVEERILP HQSSIDEDNV DEERRLAYVG
ITRAQRELWF VICRERRQFG ETMRCEPSRF LLELPQDDLI WENRKPVQTE EQRVETSKSH
IANIRDMFKK
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