| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0425 |
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| Symbol | |
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| ID | 4278402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 465201 |
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| End bp | 466772 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133178 |
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| Product | threonine dehydratase |
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| Protein accession | YP_749125 |
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| Protein GI | 114561612 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGGCTT TGGCGTCTCA AACTCAATTA GATTTAGCCC ACTATTATTT ACAGAAAATT
TTACTATCGT CTGTATATGA TGTGGCTAAA GTGACGCCAC TGTCGAGCAT GAATAAATTG
TCTGCTCGCT TTGGTTGTCA GGTGTATTTA AAGCGTGAAG ACATGCAACC AGTGCATTCG
TTTAAGTTAC GTGGGGCTTA TAACCGTATC GCTGCCTTGA CTCAAGATGA ATGTAATAAA
GGCGTAGTGT GTGCATCGGC GGGTAACCAT GCTCAAGGTG TGGCAATGTC TGCCGCCAGC
CGGGGTATTG ATGCGATTAT TGTTATGCCA AGTACCACGC CCGATATTAA AATTGATGCA
GTAAAGCGCT TAGGTGGCAC GGTAGTGTTA CACGGGCAGG CGTTTGATCA AGCCAATGAT
TATGCAAAAA ATCTGTCGGC AACAGAAGGG CGTGTTTATA TCGCTCCTTT TGATGACGAA
GCGGTTATTG CAGGCCAAGG CACAATTGCT CAAGAAATGG TGCAACAGCA GCGTGATATT
GAAATTGTGT TTGTACCCGT TGGCGGTGGT GGATTAATTG CCGGTATTGC TGCGTATTAT
AAAGCGGTCA TGCCACAAGT GAGGATCATT GGGGTTGAAC CCGAAGATGC CGCTTGTTTA
AAGGCGGCAT TAGAAGCCGA TGAACCAGTG ACACTGGCCC AAGTCGGTTT GTTTGCTGAC
GGCGTAGCGG TTAAACGCAT TGGTACTGAG CCATTTAGGT TAGCGCGTGA ATATGTTGAT
GAAGTGATTA CGGTTACTTC TGATGAAATT TGCGCAGCGG TTAAAGATAT TTTTGAAGAT
ACCCGTGCAA TAGCAGAACC GGCAGGGGCC TTGTCAATTG CTGGGCTTAA AAAGTACATG
GCGCAACAAG GTGACTCCAT TGACGCGCCG AAAAAAGTAG CGGCTATATT GAGTGGCGCC
AATGTGAATT TTCATAGTTT ACGTTACGTG TCTGAACGCT GTGAATTAGC TGAGCAAAAA
GAAGCGGTTT TAGCGGTAAA AATACCTGAA AAACCAGGCA GTTTTTTACG TTTTTGCGAG
TTACTCGATA AACGGGTGAT GACCGAGTTT AACTACCGTT TTAGTAGCCG TGATATAGCA
GTGGTGTTTG CGGGTATTCG TCTTACTGGT GGCCAAGCGG AGCTAAGTGA GATTATTGCT
AAACTTGAGT CTGAAGGCTT TGAAGTTCAA GATTTATCCC AAGATGAAAC CGCTAAACTA
CATGTGCGTT ATATGGTCGG CGGTCACCCA CTCGAACCTT TAGAAGAACG CTTATTTAGC
TTTGAGTTTC CTGAGCATCC AGGGGCATTG CTGAAGTTCT TAACCACTTT ACAGAGTAAA
TGGAATATTA GTTTATTTCA TTACCGTAAC CATGGTGCAG CCTTTGGTAG GGTGTTAACG
GGGTTTGAAG TTCCGGCTAA AGACGATGTG GCGTTTGCAC AGTTTTTAAC GGAGCTAGGT
TTCGTTTATC AAGAAGAAAC CCACAGTCCG GCATATAAGC TCTTTTTAAA TAGCACTAAA
GCAAAATCGT AA
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| Protein sequence | MLALASQTQL DLAHYYLQKI LLSSVYDVAK VTPLSSMNKL SARFGCQVYL KREDMQPVHS
FKLRGAYNRI AALTQDECNK GVVCASAGNH AQGVAMSAAS RGIDAIIVMP STTPDIKIDA
VKRLGGTVVL HGQAFDQAND YAKNLSATEG RVYIAPFDDE AVIAGQGTIA QEMVQQQRDI
EIVFVPVGGG GLIAGIAAYY KAVMPQVRII GVEPEDAACL KAALEADEPV TLAQVGLFAD
GVAVKRIGTE PFRLAREYVD EVITVTSDEI CAAVKDIFED TRAIAEPAGA LSIAGLKKYM
AQQGDSIDAP KKVAAILSGA NVNFHSLRYV SERCELAEQK EAVLAVKIPE KPGSFLRFCE
LLDKRVMTEF NYRFSSRDIA VVFAGIRLTG GQAELSEIIA KLESEGFEVQ DLSQDETAKL
HVRYMVGGHP LEPLEERLFS FEFPEHPGAL LKFLTTLQSK WNISLFHYRN HGAAFGRVLT
GFEVPAKDDV AFAQFLTELG FVYQEETHSP AYKLFLNSTK AKS
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