Gene Sfri_0424 details

Gene Information

• Locus tag: Sfri_0424
• ID: 4278401
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 463340
• End bp: 465199
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638133177
• Product: dihydroxy-acid dehydratase
• Protein accession: YP_749124
• Protein GI: 114561611
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR00110] dihydroxy-acid dehydratase

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAAT TACGTTCAGC TACCAGTACC GAAGGCCGCA ACATGGCAGG CGCCCGCGCA 
CTATGGCGTG CCACTGGCGT GAAAGAAAAT GATTTTGGTA AACCTATCAT AGCGATTGCC 
AATTCGTTCA CTCAGTTTGT CCCTGGACAT GTGCATTTAA AGAATATGGG ATCATTGGTT 
GCAGGTGCCA TTGAAGAAGC AGGCGGCATT GCCAAAGAAT TTAATACTAT TGCCGTAGAT 
GACGGTATTG CGATGGGCCA TGGCGGCATG CTGTATAGCT TACCATCGCG CGAGTTAATT 
GCAGACAGTG TTGAATACAT GGTCAATGCG CATTGTGCCG ATGCATTAGT GTGTATTTCT 
AACTGCGACA AGATTACTCC TGGCATGTTA ATGGCGGCGC TACGGTTAAA TATTCCGGTG 
GTATTTGTAT CCGGTGGGCC AATGGAAGCG GGTAAAACCA AGCTATCCGA TCAAATTATT 
AAGCTTGATT TAGTTGATGC CATGATCGCT GGTGCAGACT CTAATGTCAG TGACGAAGAC 
AGTAAGCAAA TCGAACGCAG TGCTTGTCCT ACTTGTGGGT CGTGCTCGGG TATGTTTACT 
GCTAATTCAA TGAATTGTTT AACCGAAGCC TTAGGATTGT CATTACCAGG TAATGGTTCA 
ATGTTAGCGA CTCATGAAGA CCGTCGTGAA TTATTTTTAG AAGCCGGTCG CCGTGTGATG 
ATGTTGGCAG AACGTTATTA CAAGCATGAC GATGAAACGG CATTGCCGCG CAATATTGCT 
TCATTTAAAT CATTTGAAAA TGCCATGGTA CTCGATGTTG CCATGGGCGG TTCATCTAAT 
ACAGTGTTGC ATTTAGTGGC TGCAGCGCAA GAGGCGGAAA TTGACTTTAC TATGGCGGAT 
ATTGATCGCA TATCGCGCTT AGTGCCTCAT CTATGTAAGG TTGCACCATC AACGCCTAAA 
TATCATATGG AAGATGTTCA CCGTGCTGGT GGGGTGATGG GTATTTTAGG CGAGTTAGAT 
AGAGCAGGTT TAATCCATAA CGATGTACCG CATGTGGCCG CAGACAATGG TGGCGATTTA 
AAATCAGTGT TAGCTAAGTA CGACATTAAA CAAACTAACG ATCCAGATGT AATCCGCTTT 
TTTAGTGCCG GCCCTGCTGG TATTCCAACC ACTAAAGCAT TTAGCCAAAA TTGTCGCTGG 
GATAGTGTTG ATGACGACCG TGAAAATGGC TGTATTCGTT CGCGTGAGTT TGCCTTTAGT 
CAAGAAGGTG GCTTAGCCGT ATTGTCAGGT AACGTTGCCG TTGATGGCTG TATTGTGAAG 
ACGGCAGGGG TTGATGAGTC TAATTTAACT TTTGTTGGCA GTGCCCGCGT GTATGAAAGC 
CAAGATGATG CAGTTGCTGG TATTTTAGGC GGCGAAGTGG TTGAAGGCGA TGTGGTGGTG 
ATTCGCTACG AAGGCCCTAA AGGTGGCCCT GGTATGCAAG AAATGCTGTA TCCAACAACC 
TATTTGAAAT CGCGTGGTTT AGGCGCTAAA TGTGCGTTAA TTACCGATGG TCGTTTTTCA 
GGTGGCACTT CTGGTTTGTC TATTGGCCAC GTATCACCAG AAGCGGCGTC AGGTGGCACT 
ATTGCACTGA TTGAAAATGG CGATCAAATT GCGATTGATA TTCCCAAGCG TAGTATTCAA 
CTTAATGTCA GTGAAGCAGA GCTTACTCAG CGTCGCACAG CCATGGATGC AAAAGGCCCT 
TTAGGTTGGA AGCCGGTGTC TCGTGAGCGT TATGTGTCAT TAGCCCTTAA AGCTTATGCA 
TTACTTGCAA CCAGTGCAGA TAAAGGTGCG GTACGCGATC GCACTAAGCT GGAGGGGTAA 

 

Protein sequence

MPKLRSATST EGRNMAGARA LWRATGVKEN DFGKPIIAIA NSFTQFVPGH VHLKNMGSLV 
AGAIEEAGGI AKEFNTIAVD DGIAMGHGGM LYSLPSRELI ADSVEYMVNA HCADALVCIS 
NCDKITPGML MAALRLNIPV VFVSGGPMEA GKTKLSDQII KLDLVDAMIA GADSNVSDED 
SKQIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS MLATHEDRRE LFLEAGRRVM 
MLAERYYKHD DETALPRNIA SFKSFENAMV LDVAMGGSSN TVLHLVAAAQ EAEIDFTMAD 
IDRISRLVPH LCKVAPSTPK YHMEDVHRAG GVMGILGELD RAGLIHNDVP HVAADNGGDL 
KSVLAKYDIK QTNDPDVIRF FSAGPAGIPT TKAFSQNCRW DSVDDDRENG CIRSREFAFS 
QEGGLAVLSG NVAVDGCIVK TAGVDESNLT FVGSARVYES QDDAVAGILG GEVVEGDVVV 
IRYEGPKGGP GMQEMLYPTT YLKSRGLGAK CALITDGRFS GGTSGLSIGH VSPEAASGGT 
IALIENGDQI AIDIPKRSIQ LNVSEAELTQ RRTAMDAKGP LGWKPVSRER YVSLALKAYA 
LLATSADKGA VRDRTKLEG