| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0415 |
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| Symbol | |
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| ID | 4277747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 448276 |
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| End bp | 452736 |
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| Gene Length | 4461 bp |
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| Protein Length | 1486 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638133168 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_749115 |
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| Protein GI | 114561602 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCTGTTT CAGCGCAAAA AAATGATCCT TATGACAGCC TAACCGAAGT AAAGTTTGAT
CACTTCAGTA CCGAGGGAGA CCTTAATCAA AACTCAATTA CTCGTCTGTT TATGGACAGT
TCTGGCATGT TATGGATAGG AACTCAAGAC GGTCTACACA GCTATAATGG TGTTGAGTTT
GATTTATACT TAAAACAGTC AAAAAATATC AACTCTATCT CAGGCAATTT TATCACAGAT
ATTTTGCAGT CACCTGACGG CGATTTATGG ATAGGCACCT TCAACAATGG ACTCAATAGA
CTCAACCTCA CTACAGGGGA ATTCACTGCG TTTAAACAAC CTCAAGGCTT AACTGAGCTT
CAGGTAACCC ATCTTGCAGT GATTGGAGAT ACCTTATGGG TGGGAACGCG TTCGGGTCTG
TACATATTAT CCTTAAAAAC CGAAAAAATT ATTCCTGTCA GTTTAGGTAA TAATATCACT
CCAAATATAA CCAGCATTGC CAATATTGAC GATAAATATA TTGTCATAGG CACTCAATCA
CATGGCACAT TTGCCATTGA TAGTAATACC ATTATTCGGC TTGATATCCC GGTCAATATG
ACGGTAAACC AAATCAAATC CAGCTCTGTT TATTCCGTCT GGCTAGCCAT CGACAACCAA
ATTTGGCGTT ACAATCTCGA TACTCATAAA AAAGAATTAA TATGGTCGCA TGACAATGGT
TTGGGTAATA ACCGTAAGAT TATTGATTTT GTCGTGGTGA ATGCCAATCA GATATTTGCT
ATCGGCAACA ATACAGGCTT ATTCAAACTC GATTTTATTG ATGGTAAGTG GCGCAGCACG
CTTTATAAGC ATAATCCGCA AAAACTCAAT ACCATCAGTG CTAATACCCT GCAAAACCTA
ATGCTAGATC AAAACGGCAC CCTATGGATT GGTACAGGTT ATTCGGGCAT CGATAAACTG
AATCTCAGCC ATCAATATTT TAGCCACTTT TACGACTACC AAACTAATGC TCCAGGCATG
GCAAACATGA TCCGCGTGAT TTTGCGGGAT ACACAGCAAC GCCTATGGAT AGGTACCGAT
GGTGCGGGGC TTAAGTATTT GGCCCCCAAT GATAACCAAT ATCACTATAT CAACGATTTA
TTTGCAAAAA AATTAGCAAT ACCAACAGAA CAATTATCGT TGATAGTGCA TGATATTAAA
CAAGATAAAC AAGGTGTACT GTGGTTTGCC ACCAATGTAG GGCTGTTTAC CTTAGATAAG
AGTAATACCC TGCAGCAAAT TAAACCGGCA AACGGACAAT TTCATACCGA TACCCAGATC
CGCAGCTTAG CCTTTGATGA CAAAGACCGT TTATGGATAG CCAGCTCACA AGGTTTGTAT
TTTATCTCTG AATATACAAA TCGTATGATG GCTTATAACT TTGGCTTTCA GGCTGATTTC
TCACCATTCA AATACCAAAT TATTAGGCTC TATTTTAGCC AGGGTTATTT ATGGCTCGGC
ACAATGGGCG GAGTGGTTAG GCTTTCAGTT GAAGAACGAA AACTAGATTT TTTAAGCCAT
GACTCAGAAA ATCCTTACAG TCTTAGTGAC AATCGTGTGA GAGACTTTTT ACAGGCAGAA
AATGGCGATT TTTGGGTGGC CACTCATGGT GGTATAGACA AGCTAACAGT TGAATATGGT
ACGTTTAAAT TTGAACGAAT GGACGTCAAT GCTGATAACA GCAGTAATAC GGTTTATGCT
ATTTTAGAAG ACGATAAGCA TGATTTGTGG CTAAGTACTA ACTCGGGGGT TTCACGTTTT
ACTCCTAGTA CTCGAAGCTT TATTTCCTAT AATAAATTCG AAGGTTTGCA AGCCAATGAG
TTTAATGGTG CAGCCAAGTT TAAAGAGCTT AACGGTACCT TATGGTTTGG TGGTATTCGA
GGCCTTAACC AGTTTAATCC AAGCACTATT CCAAGCCAAA GAGCTGAAAA CAAACTGGCA
CTGACAAAAT ACACTATTGG TGAAACCCAA CACCCTATTC GCGACTTAAG CCATGCTCCG
CGCATTATCA TGCCTTATGA ACAACAACTC ATCAGCTTTG AGATCGGCTC ACTCAATTTT
AGTTACCCTG GATTAAGCCG TTTTAGCTAC TTTTTAGACG GTTATGATAA CGATTGGCGT
GAACTATCCC ATGGTAACGA AATCACTTAT ACCAACTTAC CACCGGGTGA ATACAAATTA
GCGGTTCGCC ATGCGCTAGG AACGAATAGA TACAGTGAAT ACACCCTCAA TGTGAATGTG
TCAGTAGTGC CACCAATGTA TATGACCAGC ACAGCCTATA TACTGTATGT GACAGTCGGG
TTATTGATTA TTATTTGGTT TTTTTATGCA AGACAGAAAA AAGTGGCCAA GCAGCGCGAA
TTTGATAACA GTATTCGCGC CTCTGAAGAG CGACTAAAAC TGGCACTTTG GGCCTCTGGT
GACGGAATGT GGGACTGGAA CATTAAAGAC GATAAAGTCT ATCGCACCAA CATGGTCGAG
CCGATGAGTT TTTCGTTAAA AGATCAATTA TTGATTAAAA ACATTGATCC GGAAGACAGA
CCACGAGTGC AAAAATTGCT TAACGATCAC CTCAATGGTG AAAGTGAGTT TTTTGAAGCA
GAGTATCGCG TTGAAACTAA ACCCGGACAA TGGGCTTGGG TGCTCGACCG TGGCCAAATT
GTTGAACGTG ATAGCAATAA TATTCCAGTG CGAATGGCCG GAACTCATAA AGACATTACT
AGCCGAAAGA TCACAGAAAA CGAACTTAAG CTATCATCAC AAGTACTGTT TAGCATGAAC
GAAGCCGTTG TCGTCGGTGA ACTGGACTAT CAAATACGCT CAATAAATCC AGCATTTAGC
CGCATTACTG GCTTTAAACA CCGTGATGTT GTCGGTAAGC ATTTCTTGTT TTTAACCATG
GGAAAGCAGT CGCGCGAGTT TTATAACTCA GTTGAAACCC AACTATTAAG ACACAAACAT
TGGGCCGGTG AAATTCACAT TAGAACCCGC AACCGTCGCG GCATTCTTGC ATGGCTAGAA
ATCAACCAAG TTATCGATAA TAAAGGTGAA ACAAGTCACT TTGTGGCAGT ATTCACCGAT
ATTACAGCAC GTAAAAAAGC CGAAGAAGAT TTACGAGTAC TGGCTAACTT CGATCCACTG
ACTGGACTGC CTAACCGCAC TTTATTCCAG GACCGGCTCA ATCAAGCCGT GACTAAAGCA
CACCGTGCCA ATAGCATCGT GGCATTGTTA TTTTTAGACC TTGACCGATT TAAACATATC
AATGATTCAA TGGGGCACCA CATCGGTGAT TTACTGCTTA AAGCCGTCGC ACATCGCCTG
CAAAATGCAG TTCGAGATGG TGATACTGTT GCACGCTTAG GTGGGGATGA ATTTACCATT
ATTTTAGAAG GCGTTGCCAA AACGAAAGCC GCCACCATTA TTGCCGAAAA AGTGTTACAT
GCTTTTCAAA CACCTTTTTT ACTTGATGAT AAAATACTGA CTATCTCACC GTCTATTGGT
ATCAGTTTGT ACCCAGAAGA TGCAGATGAT ACCACCTCAT TAATTAAGTA TGCTGATACC
GCCATGTATC ACGCAAAATC ACTGGGACGC AATAACTTCC AATTTTATAC CGAGCAATTA
AACCAATATG CAACACGTCA TGTTCAGTTA GAGGCTGGTC TTAAAAAAGC GATTCAAGAC
AATGAGCTAT ATTTGGTTTA TCAACCTAAA TATGATGTAA AAACTGAAAA AATTATCGGA
CTGGAAGCGT TAATGCGCTG GGAAAGCCCA GAACTTGGTT TTATTTCACC GGTTGAGTTT
ATTCCGCTAG CAGAAGAAAC AGGCATCATT AATCAGATTG GTCATTGGGC TATTCAACAA
GCCTGTAACC AACTGGCGCA ATGGCACCAA CAAGGGTTTG AGCATATCTC TATTGCCGTT
AACCTTTCAG CCAGACAATT GAAGGCCGAT ATCATTTCGA CTATAGAAGT CGCATTAGCG
GTATCTGGAT TACCGGCAAG TGCTCTAGAA CTCGAATTAA CCGAGTCAAT GATTATGGGT
AACCCACAAG ATTCAGTGAC CGTGTTATCG CAGCTCAAAG CCTTAGGTTT GACCATTGCT
ATTGATGACT TTGGTACCGG ATACTCAAGC TTAAGCTATT TGAAACGCTT CCCAATTGAT
ACCTTGAAGA TTGATCGTGA GTTTGTGCGT GATATAACTG AAGATCCTGA CGATGCTGCC
ATCACTAGCG CCATTATAAC CTTGGCCCAC AGTTTAGAGC TTAACGTTGT GGCTGAAGGC
GTTGAAACCC AAGCGCAATT GAATTTCTTA CGTGAGGGAG GTTGTGATCA AGTGCAAGGC
TTCTTGCTCA GTAAACCACT GAGTGCGGTT GATTGCCTGG CATTATTAAC GCAAGACAAA
TCAGAGGTTA GCCATTCATA A
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| Protein sequence | MSVSAQKNDP YDSLTEVKFD HFSTEGDLNQ NSITRLFMDS SGMLWIGTQD GLHSYNGVEF
DLYLKQSKNI NSISGNFITD ILQSPDGDLW IGTFNNGLNR LNLTTGEFTA FKQPQGLTEL
QVTHLAVIGD TLWVGTRSGL YILSLKTEKI IPVSLGNNIT PNITSIANID DKYIVIGTQS
HGTFAIDSNT IIRLDIPVNM TVNQIKSSSV YSVWLAIDNQ IWRYNLDTHK KELIWSHDNG
LGNNRKIIDF VVVNANQIFA IGNNTGLFKL DFIDGKWRST LYKHNPQKLN TISANTLQNL
MLDQNGTLWI GTGYSGIDKL NLSHQYFSHF YDYQTNAPGM ANMIRVILRD TQQRLWIGTD
GAGLKYLAPN DNQYHYINDL FAKKLAIPTE QLSLIVHDIK QDKQGVLWFA TNVGLFTLDK
SNTLQQIKPA NGQFHTDTQI RSLAFDDKDR LWIASSQGLY FISEYTNRMM AYNFGFQADF
SPFKYQIIRL YFSQGYLWLG TMGGVVRLSV EERKLDFLSH DSENPYSLSD NRVRDFLQAE
NGDFWVATHG GIDKLTVEYG TFKFERMDVN ADNSSNTVYA ILEDDKHDLW LSTNSGVSRF
TPSTRSFISY NKFEGLQANE FNGAAKFKEL NGTLWFGGIR GLNQFNPSTI PSQRAENKLA
LTKYTIGETQ HPIRDLSHAP RIIMPYEQQL ISFEIGSLNF SYPGLSRFSY FLDGYDNDWR
ELSHGNEITY TNLPPGEYKL AVRHALGTNR YSEYTLNVNV SVVPPMYMTS TAYILYVTVG
LLIIIWFFYA RQKKVAKQRE FDNSIRASEE RLKLALWASG DGMWDWNIKD DKVYRTNMVE
PMSFSLKDQL LIKNIDPEDR PRVQKLLNDH LNGESEFFEA EYRVETKPGQ WAWVLDRGQI
VERDSNNIPV RMAGTHKDIT SRKITENELK LSSQVLFSMN EAVVVGELDY QIRSINPAFS
RITGFKHRDV VGKHFLFLTM GKQSREFYNS VETQLLRHKH WAGEIHIRTR NRRGILAWLE
INQVIDNKGE TSHFVAVFTD ITARKKAEED LRVLANFDPL TGLPNRTLFQ DRLNQAVTKA
HRANSIVALL FLDLDRFKHI NDSMGHHIGD LLLKAVAHRL QNAVRDGDTV ARLGGDEFTI
ILEGVAKTKA ATIIAEKVLH AFQTPFLLDD KILTISPSIG ISLYPEDADD TTSLIKYADT
AMYHAKSLGR NNFQFYTEQL NQYATRHVQL EAGLKKAIQD NELYLVYQPK YDVKTEKIIG
LEALMRWESP ELGFISPVEF IPLAEETGII NQIGHWAIQQ ACNQLAQWHQ QGFEHISIAV
NLSARQLKAD IISTIEVALA VSGLPASALE LELTESMIMG NPQDSVTVLS QLKALGLTIA
IDDFGTGYSS LSYLKRFPID TLKIDREFVR DITEDPDDAA ITSAIITLAH SLELNVVAEG
VETQAQLNFL REGGCDQVQG FLLSKPLSAV DCLALLTQDK SEVSHS
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