| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0414 |
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| Symbol | |
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| ID | 4277746 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 447128 |
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| End bp | 448219 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133167 |
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| Product | branched-chain amino acid aminotransferase |
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| Protein accession | YP_749114 |
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| Protein GI | 114561601 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR01123] branched-chain amino acid aminotransferase, group II |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.718054 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACATAA AATATAATTT AAAATCAGCG TCAGAGCGCC GCACAGAACC ATTTAAGCCA
GAAGGCGATG TAGGTTTCGG TAAGCTTCGT ACTGATCACA TGTTTTTGAT GGATTATCGT
GATGGTCAAT GGTGCGATCC GCGCATAGTC CCTTACGGTC CGTTTGAAAT GGCACCAGGT
GCAATGTCAT TGCATTATGG CCAATCGATT TTTGAAGGCG CTAAAGCCTT TATGCACGAA
GACGGCGAGA TTTACACCTT CCGCTTAAAT AAAAATGCTG AGCGCATGAA CCGTTCTGCC
GATATCGTGT GTATTCCCAA TATCGATGAA AGCATGCAAG TAAAGGCTAT CAATGCCCTT
ATTGATGTTG ACCGTTTATG GTTCCCACAG CAACAAGGCG CGTGTTTATA CATTCGACCT
TTTATTTTTG CAACAGAAGA TCGTTTGTCT GTTAGCCCTA GTCAACAATA TACATTCTGC
GTAATGCTAA GCCCATCTGG AGCGTATTAT GCCTCTGGGG TTAATAATGG TATTCGCTTG
TTAATCAGTA CTAAGTACCA CCGTGCAGTA TCTGGTGGTA CTGGAGCTTC AAAAGCTGCT
GGTAACTATG CAGCCTCACT GCGTGCAGGT AAAGCGGCTG TAGAATATGG CGCATCGCAG
GTATTGTATT TAGATTCAAC CAATACTCAA ATTGAAGAAG CTGGCGCGAT GAATCACTTC
CACATTTTAA AAGATGGCAC TGTGATTATT CCAACGTTCA CTGATACCAT TTTAAAATCC
ATTACCTCTC AGTCCATTAT GGAACTTGGG GATATGCTGG GTTGTGAGGT GAGACAAGAG
ACGGTGATGT TAGATAAGTT CATTGCTGAT ATTGAAGCGG GTGAAATTAT TGAAGCGGGT
GGATTTGGTA CAGCTGCAGT GGTATCGCCT GTAAGCTCAT ATATCTTCGA AGATGGCCGA
ATTTTGACGG TTGGCGACGG TAAAGTAGGT CCCAATATTC AGCGTATTTA TAAGCTGTTT
ACTGATCTAC AAAAAGGCAA CGTCGCTGCA CCGCAAGGCT GGGTAAAACG CGTTGAACGT
GTTGCTCCGT AG
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| Protein sequence | MDIKYNLKSA SERRTEPFKP EGDVGFGKLR TDHMFLMDYR DGQWCDPRIV PYGPFEMAPG
AMSLHYGQSI FEGAKAFMHE DGEIYTFRLN KNAERMNRSA DIVCIPNIDE SMQVKAINAL
IDVDRLWFPQ QQGACLYIRP FIFATEDRLS VSPSQQYTFC VMLSPSGAYY ASGVNNGIRL
LISTKYHRAV SGGTGASKAA GNYAASLRAG KAAVEYGASQ VLYLDSTNTQ IEEAGAMNHF
HILKDGTVII PTFTDTILKS ITSQSIMELG DMLGCEVRQE TVMLDKFIAD IEAGEIIEAG
GFGTAAVVSP VSSYIFEDGR ILTVGDGKVG PNIQRIYKLF TDLQKGNVAA PQGWVKRVER
VAP
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