Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0374 |
Symbol | |
ID | 4278790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 404144 |
End bp | 406192 |
Gene Length | 2049 bp |
Protein Length | 682 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638133128 |
Product | type IV pilus secretin PilQ |
Protein accession | YP_749075 |
Protein GI | 114561562 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0344612 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATCTT CTGCCGCGAT AAAAAAAGCA ATAACAAAGT TATTATTTTT TAGAGCGTTT TTAGGCGCAG TATTATTAAT GGGTTTAATA CCTAGTGCGA TAGCTGCTAA TCGTCTTATG GACGTCAAAT ATCATTCAAT GGTTGATCAC CAATTAGAAT TAGAGTTGAT TTTTGAATCA TCAATCATGT CACCGTCTGT TGATTTATCA GCAGACCCAG CTGAAATTAT GTTGAATTTC TCAGACACTA TTTCTAATTT AAGTAAAAGT AAAATTCCGG TAAATGCTGT TGGTGTAAAA GAGTTAACCA CACAACAACA AGGTGGCGAT TTACAAATCA TTGTTGCAAT GACAAAAGTA AAACCATATC AAGGTAAAAT TGTTGGTAAT AGTTATCGAT TAACTATTAA TGATGATGTG TCTGGTCCGG TTGAGGCAAA CAATCCATTT GTTAATGGTA TTAGCAGTAT TGATTTTCGC CGCAATAAAA CCGGTGGTGG AGAAATATTA TTTAATCTTA GCAATCGTTC TGTAGCAGCG AATGTGGAAC AAGTTGGTTC AAAGCTTGAG ATAAAACTCT ATAACACCGA TATTGGTAAT GACTTACTTT ACGTTATGGA CGTACAAGAC TTTGCTACAC CAGTGAATAG TTTTGAAACT TTTAAAGATG ATTTAACTGC CCGTATTTTG GTTGATGTTG ACGGCAACTA TGACTATAAC TATCGCCAAG ATGGCAATGT GTTTAAAGTT AGCGTAGATA AAGTTGAGCG TGTCTCTGTA GCTAAAGAGG CTAAAAAATA TAATGGTCGT TCATTGTCAC TAAACTTCCA AAACATTTCA GTTCGTACTG TGTTGCAAAT TATTGCTGAT TATAACAACT TTAACCTGGT GACGAGCGAT ACTGTTGAAG GTGAGATTAC CTTACGTTTA GATGATGTGC CTTGGGATCA AGCTTTAGAT CTTATCTTGC AAACTAAAGG CCTCGACAAG CGTATTGAAG GTAATATTTT AATGGTGGCA CCGAGTGAAG AACTTGCCAT TCGCGAAAGC AATGACCTGA AAAATCGCCA AGAAGTAAAA GAATTAGCAC CGCTCTATTC TGAATATTTA CAAATAAACT ATGCTAAAGC TATAGATATT GCCGAGTTAC TTAAAACTAC GGATTCAACG TTATTATCAT CTCGCGGCAG TGTCGCTGTT GATGAGCGTA CAAATACGTT ACTGGTAAAA GATACCGCTG AGATTTTAGA AAATGTACAC CGCTTAATAG AAGTATTAGA CATTCCTATT AAACAAGTAC TAATTGAAGC GCGTATGGTG ACAGTGAAAG ACGATGTATC TGAAGATCTC GGTATTCGTT GGGGCATAAC TGATCAACAA GGTTCTAAAG GCACATCTGG CACCATTGGA GGAGCAACGA GTATTGCTAA CGGTACTATT CCAAGCATCG ATGATCGCCT CAATGTTAAT TTACCGGCAG CAGCAAGTTC AGCGACCAGT ATCGCTTTCC ATGTGGCTAA ATTGGCAGAC GGTACAGTAC TCGATTTAGA GTTAAGTGCA TTAGAGCAAG AAAACAAAGG TGAGATCATT GCCAGCCCAC GTATTACCAC ATCTAACCAG AAGTCGGCAT ACATTGAACA GGGTGTTGAA ATCCCTTACG TAGAGTCTGC ATCTAGCGGT GCTACAACAG TAACCTTTAA GAAGGCCGTG TTATCGCTAC GTGTAACTCC GCAAATCACT CCGGATGATA GGGTGATCCT AGATCTTGAA ATAACCCAAG ATTCTCAGGG AACAACTGTT GCTACAGCAA CGGGTGAAGC GGTTGCTATT GATACTCAGC GTATTGGTAC TCAGGTACTA GTCGATAATG GCGAAACAAT TGTGTTAGGT GGTATTTACC AACAAAATCT CATTAGCCGA GTAAGCAAAG TTCCGGTACT GGGTGATATT CCGTTAGTTG GTTTCTTATT TAGAAATTCA ACCGACACAA ATGAGCGTCA AGAACTGTTA ATTTTTGTAA CCCCTAAGAT TGTGGCTGAC AAACGTTAA
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Protein sequence | MESSAAIKKA ITKLLFFRAF LGAVLLMGLI PSAIAANRLM DVKYHSMVDH QLELELIFES SIMSPSVDLS ADPAEIMLNF SDTISNLSKS KIPVNAVGVK ELTTQQQGGD LQIIVAMTKV KPYQGKIVGN SYRLTINDDV SGPVEANNPF VNGISSIDFR RNKTGGGEIL FNLSNRSVAA NVEQVGSKLE IKLYNTDIGN DLLYVMDVQD FATPVNSFET FKDDLTARIL VDVDGNYDYN YRQDGNVFKV SVDKVERVSV AKEAKKYNGR SLSLNFQNIS VRTVLQIIAD YNNFNLVTSD TVEGEITLRL DDVPWDQALD LILQTKGLDK RIEGNILMVA PSEELAIRES NDLKNRQEVK ELAPLYSEYL QINYAKAIDI AELLKTTDST LLSSRGSVAV DERTNTLLVK DTAEILENVH RLIEVLDIPI KQVLIEARMV TVKDDVSEDL GIRWGITDQQ GSKGTSGTIG GATSIANGTI PSIDDRLNVN LPAAASSATS IAFHVAKLAD GTVLDLELSA LEQENKGEII ASPRITTSNQ KSAYIEQGVE IPYVESASSG ATTVTFKKAV LSLRVTPQIT PDDRVILDLE ITQDSQGTTV ATATGEAVAI DTQRIGTQVL VDNGETIVLG GIYQQNLISR VSKVPVLGDI PLVGFLFRNS TDTNERQELL IFVTPKIVAD KR
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