Gene Sfri_0374 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0374 
Symbol 
ID4278790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp404144 
End bp406192 
Gene Length2049 bp 
Protein Length682 aa 
Translation table11 
GC content39% 
IMG OID638133128 
Producttype IV pilus secretin PilQ 
Protein accessionYP_749075 
Protein GI114561562 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4796] Type II secretory pathway, component HofQ 
TIGRFAM ID[TIGR02515] type IV pilus secretin (or competence protein) PilQ 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0344612 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATCTT CTGCCGCGAT AAAAAAAGCA ATAACAAAGT TATTATTTTT TAGAGCGTTT 
TTAGGCGCAG TATTATTAAT GGGTTTAATA CCTAGTGCGA TAGCTGCTAA TCGTCTTATG
GACGTCAAAT ATCATTCAAT GGTTGATCAC CAATTAGAAT TAGAGTTGAT TTTTGAATCA
TCAATCATGT CACCGTCTGT TGATTTATCA GCAGACCCAG CTGAAATTAT GTTGAATTTC
TCAGACACTA TTTCTAATTT AAGTAAAAGT AAAATTCCGG TAAATGCTGT TGGTGTAAAA
GAGTTAACCA CACAACAACA AGGTGGCGAT TTACAAATCA TTGTTGCAAT GACAAAAGTA
AAACCATATC AAGGTAAAAT TGTTGGTAAT AGTTATCGAT TAACTATTAA TGATGATGTG
TCTGGTCCGG TTGAGGCAAA CAATCCATTT GTTAATGGTA TTAGCAGTAT TGATTTTCGC
CGCAATAAAA CCGGTGGTGG AGAAATATTA TTTAATCTTA GCAATCGTTC TGTAGCAGCG
AATGTGGAAC AAGTTGGTTC AAAGCTTGAG ATAAAACTCT ATAACACCGA TATTGGTAAT
GACTTACTTT ACGTTATGGA CGTACAAGAC TTTGCTACAC CAGTGAATAG TTTTGAAACT
TTTAAAGATG ATTTAACTGC CCGTATTTTG GTTGATGTTG ACGGCAACTA TGACTATAAC
TATCGCCAAG ATGGCAATGT GTTTAAAGTT AGCGTAGATA AAGTTGAGCG TGTCTCTGTA
GCTAAAGAGG CTAAAAAATA TAATGGTCGT TCATTGTCAC TAAACTTCCA AAACATTTCA
GTTCGTACTG TGTTGCAAAT TATTGCTGAT TATAACAACT TTAACCTGGT GACGAGCGAT
ACTGTTGAAG GTGAGATTAC CTTACGTTTA GATGATGTGC CTTGGGATCA AGCTTTAGAT
CTTATCTTGC AAACTAAAGG CCTCGACAAG CGTATTGAAG GTAATATTTT AATGGTGGCA
CCGAGTGAAG AACTTGCCAT TCGCGAAAGC AATGACCTGA AAAATCGCCA AGAAGTAAAA
GAATTAGCAC CGCTCTATTC TGAATATTTA CAAATAAACT ATGCTAAAGC TATAGATATT
GCCGAGTTAC TTAAAACTAC GGATTCAACG TTATTATCAT CTCGCGGCAG TGTCGCTGTT
GATGAGCGTA CAAATACGTT ACTGGTAAAA GATACCGCTG AGATTTTAGA AAATGTACAC
CGCTTAATAG AAGTATTAGA CATTCCTATT AAACAAGTAC TAATTGAAGC GCGTATGGTG
ACAGTGAAAG ACGATGTATC TGAAGATCTC GGTATTCGTT GGGGCATAAC TGATCAACAA
GGTTCTAAAG GCACATCTGG CACCATTGGA GGAGCAACGA GTATTGCTAA CGGTACTATT
CCAAGCATCG ATGATCGCCT CAATGTTAAT TTACCGGCAG CAGCAAGTTC AGCGACCAGT
ATCGCTTTCC ATGTGGCTAA ATTGGCAGAC GGTACAGTAC TCGATTTAGA GTTAAGTGCA
TTAGAGCAAG AAAACAAAGG TGAGATCATT GCCAGCCCAC GTATTACCAC ATCTAACCAG
AAGTCGGCAT ACATTGAACA GGGTGTTGAA ATCCCTTACG TAGAGTCTGC ATCTAGCGGT
GCTACAACAG TAACCTTTAA GAAGGCCGTG TTATCGCTAC GTGTAACTCC GCAAATCACT
CCGGATGATA GGGTGATCCT AGATCTTGAA ATAACCCAAG ATTCTCAGGG AACAACTGTT
GCTACAGCAA CGGGTGAAGC GGTTGCTATT GATACTCAGC GTATTGGTAC TCAGGTACTA
GTCGATAATG GCGAAACAAT TGTGTTAGGT GGTATTTACC AACAAAATCT CATTAGCCGA
GTAAGCAAAG TTCCGGTACT GGGTGATATT CCGTTAGTTG GTTTCTTATT TAGAAATTCA
ACCGACACAA ATGAGCGTCA AGAACTGTTA ATTTTTGTAA CCCCTAAGAT TGTGGCTGAC
AAACGTTAA
 
Protein sequence
MESSAAIKKA ITKLLFFRAF LGAVLLMGLI PSAIAANRLM DVKYHSMVDH QLELELIFES 
SIMSPSVDLS ADPAEIMLNF SDTISNLSKS KIPVNAVGVK ELTTQQQGGD LQIIVAMTKV
KPYQGKIVGN SYRLTINDDV SGPVEANNPF VNGISSIDFR RNKTGGGEIL FNLSNRSVAA
NVEQVGSKLE IKLYNTDIGN DLLYVMDVQD FATPVNSFET FKDDLTARIL VDVDGNYDYN
YRQDGNVFKV SVDKVERVSV AKEAKKYNGR SLSLNFQNIS VRTVLQIIAD YNNFNLVTSD
TVEGEITLRL DDVPWDQALD LILQTKGLDK RIEGNILMVA PSEELAIRES NDLKNRQEVK
ELAPLYSEYL QINYAKAIDI AELLKTTDST LLSSRGSVAV DERTNTLLVK DTAEILENVH
RLIEVLDIPI KQVLIEARMV TVKDDVSEDL GIRWGITDQQ GSKGTSGTIG GATSIANGTI
PSIDDRLNVN LPAAASSATS IAFHVAKLAD GTVLDLELSA LEQENKGEII ASPRITTSNQ
KSAYIEQGVE IPYVESASSG ATTVTFKKAV LSLRVTPQIT PDDRVILDLE ITQDSQGTTV
ATATGEAVAI DTQRIGTQVL VDNGETIVLG GIYQQNLISR VSKVPVLGDI PLVGFLFRNS
TDTNERQELL IFVTPKIVAD KR