| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0372 |
|---|
| Symbol | |
|---|
| ID | 4278788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 402987 |
|---|
| End bp | 403604 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 638133126 |
|---|
| Product | pilus assembly protein, PilO |
|---|
| Protein accession | YP_749073 |
|---|
| Protein GI | 114561560 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3167] Tfp pilus assembly protein PilO |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.116717 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTCG ACCTAGATCA ATTTAACGAT ATTGATTTTG AAAATATCGG TGGTTGGCCC
AAACTGGTAA AAATTGTATT TGCTGTATTT TTGTCTTTGT GTGTTATCGG TGCGAGTTAT
TATTTATTTA TTTCAGATTC TATCGATCAA ATGGAAGCTG AACAGCACAA AGAAATTCAA
TTACGTGAAG ATTTTGAAAC TAAATATCGT TTAGCAGCTA ATCTTAAGCT ATACCGTGAA
CAATTAGACG TGATGGAAGT GCAGTTTGCC GAATTGCTTA AAATGCTACC CTCCGAAAAT
GAAATGCCTG GTTTATTAGA TGATTTAACG TTTGTTGCAA CTGACGCAGG CCTCAGAATT
AATAGCCTAG ATTGGGATGA TGAAATCGAA CGTGATTTTT ATATTGAATT TCCAATAAAA
ATGTCAGTAG TAGGTGATTA CCATCAAATG GGTAATATGG TTAGTGGCGT TGCCAAGTTA
CCCCGAATTG TCAGTCTGCA TGATTTTAGT ATCAAGCAGA ATGATGCCGG TGGATTATCG
ATGGATATTC TCGCTAAAAC GTATCGTTTT AAAGAGGGGG CTGAATTAAC ACAACAGGCC
AATAAGGGGC AGAAATAA
|
|---|
| Protein sequence | MNLDLDQFND IDFENIGGWP KLVKIVFAVF LSLCVIGASY YLFISDSIDQ MEAEQHKEIQ
LREDFETKYR LAANLKLYRE QLDVMEVQFA ELLKMLPSEN EMPGLLDDLT FVATDAGLRI
NSLDWDDEIE RDFYIEFPIK MSVVGDYHQM GNMVSGVAKL PRIVSLHDFS IKQNDAGGLS
MDILAKTYRF KEGAELTQQA NKGQK
|
|---|
| |