| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0371 |
|---|
| Symbol | |
|---|
| ID | 4278787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 402406 |
|---|
| End bp | 402990 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638133125 |
|---|
| Product | fimbrial assembly family protein |
|---|
| Protein accession | YP_749072 |
|---|
| Protein GI | 114561559 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3166] Tfp pilus assembly protein PilN |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.366153 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAACA TAAACTTATT ACCTTGGCGT GAAGAAGCTA GAGAAAAGCA AAAACGCGAT
TTTATCGGCA TTTTAGCGTT AGTTTTTTTA GTCACATCAC TCGTTGTATA TTTATTTTTG
GGTTTTCTAG AGGTTGTCAC TGATGATCAG CGTGAGCGTA ATGCATATTT GGTCTCAGAA
ATTACCTTAC TTGATACCCA GATAGCAGAA ATTAGAAAAA TTACCGAACG TAAAAAAGAT
ATCGAACGTC GAACTGAGAT TATTCTCAAT TTACAGCAGT CGCGTAATTT ACCTACTCAT
GTTTTAGATG AATTAGTCCG AATCGTGCCA CCTGGTATTT ATCTTTCAAG TATAGAGAAA
AAAGGTAGCG TATTATTAAT CGAAGGGCGT AGTGAATCAA ATAATAACGT CGCGAATATG
ATGAGAAAGG TTAAAACATC TTCTTATCTT AACGATCCGA GTATGCAATC GATTGTGACC
CAAAATGAAG AATTAAGGCA GTTACAGCGG TTTAAATTAC GTGTCACTAT CCGTGATGAT
TCACAAGTCA CTAATGTTGA TCCGAACCAA GGAGCGAGAA AATGA
|
|---|
| Protein sequence | MANINLLPWR EEAREKQKRD FIGILALVFL VTSLVVYLFL GFLEVVTDDQ RERNAYLVSE
ITLLDTQIAE IRKITERKKD IERRTEIILN LQQSRNLPTH VLDELVRIVP PGIYLSSIEK
KGSVLLIEGR SESNNNVANM MRKVKTSSYL NDPSMQSIVT QNEELRQLQR FKLRVTIRDD
SQVTNVDPNQ GARK
|
|---|
| |