| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0370 |
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| Symbol | |
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| ID | 4278786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 401339 |
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| End bp | 402418 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638133124 |
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| Product | type IV pilus assembly protein PilM |
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| Protein accession | YP_749071 |
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| Protein GI | 114561558 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
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| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.519151 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTTCTA AATTATGGAA GCGTCAAGCA CCTCAGATGG TTGGGATTGA TATTGGGTCT
CATGAAATAA AAGCCATTTT GTTGAGCAAG ACTGCGGATG GATATAAAAT TCAAAATCAT
GCGTCAGTTC CTGTTAGAAA GGGAGCTGTA GTCGATCATG ATATTCGTGA TACTGAAGCG
GTAATTGAGT CACTAAGACA GATTCGGCGG GGTTTACCTA AATCGCTAAA GTTCGCAGCT
GTCGCGGTTT CTGGCTCTGC CGTTATGACA AAAGTCATTT ATATGGATGC GGCGTTAAAT
GAAGAGGAAA TGGAGGCTCA AATTGAAATT GAAGCTGACA ACCTTATTCC TTATTCACTT
GATGAAGTCA GCATTGATTT TGAAAGGCTT AATCCGAATA TTACCGACCC AACCAAAGTT
AACGTATTAC TGAGCGCATG CCGCACAGAG AATATTGATT CGCGTGTTGA CTCTTTGGAT
GCTATTGAGC TGGATGTTAA AGTTGTTGAT GTGGAAGCTT ATGCACTAGG GCGCTCTGCA
GAATTAATTT ATGCTCAGTT ACCTGACGGC GCTAAAGCTA AATCAATCGC CATGGTTGAT
ATTGGTGCCA ATATGACCAC ATTTTCTGTG GTTGAAAATG GTGATACTAC CTTTATACGT
GAGCAAGCCT TTGGCGGTGA GTTATTTACT CAATCAATTG TGTCATTTTA TGGTATGCCC
CATGATGAGG CTGAGCGAGC TAAGATTTCT GGACAATTAC CGCGTAATTA TATGTTCGAA
GTTTTATCTC CGTTTCAAAT GCAACTGTTA CAACAAATTA AACGAACCTT ACAAATATAT
TGTACTGCCA GTGGGCGTGA AAAAGTTGAC TATATTGTTT TGTGTGGTGG TACAGCTAAG
TTAGAAGGAA TGGTTGAATT ACTAACAAAC GAGTTAGGTA CTCATACCAT TGTTGCTGAT
CCTTTTCAGG GGTGTTTGCA TGCAGATGAT GTTATGAAAG GTCAACTTCA ACCGAATATA
AGCAAATATA TGGTGGCATG TGGTCTTGCG CTAAGGAGTT ATGCTCAATG GCGAACATAA
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| Protein sequence | MLSKLWKRQA PQMVGIDIGS HEIKAILLSK TADGYKIQNH ASVPVRKGAV VDHDIRDTEA
VIESLRQIRR GLPKSLKFAA VAVSGSAVMT KVIYMDAALN EEEMEAQIEI EADNLIPYSL
DEVSIDFERL NPNITDPTKV NVLLSACRTE NIDSRVDSLD AIELDVKVVD VEAYALGRSA
ELIYAQLPDG AKAKSIAMVD IGANMTTFSV VENGDTTFIR EQAFGGELFT QSIVSFYGMP
HDEAERAKIS GQLPRNYMFE VLSPFQMQLL QQIKRTLQIY CTASGREKVD YIVLCGGTAK
LEGMVELLTN ELGTHTIVAD PFQGCLHADD VMKGQLQPNI SKYMVACGLA LRSYAQWRT
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