| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0369 |
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| Symbol | |
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| ID | 4278785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 398568 |
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| End bp | 401225 |
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| Gene Length | 2658 bp |
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| Protein Length | 885 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133123 |
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| Product | penicillin-binding protein, 1A family protein |
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| Protein accession | YP_749070 |
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| Protein GI | 114561557 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0358767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTACT TCACCAAAAA CTCTCCCGCT TATATACTAC CGCTACTATT TGTGATTTTC
TGGAATTATC GAGTGAAGTG GTTTAAACGT TTATTAATTG CATTTTTTAG CCTATCACTA
CTTGGCATTG CTGCTATAGC TGCCGCTTAC TTTTATGTGC TACCTGATTT ACCCGATGTT
AATTCGCTAA AGACGGTCCA ATTACAAACT CCGCTGCGTA TTTATAGCCG CGATGGCAAA
CTGATTTCTC AATTTGGTGA GAAACGTCGT ATACCTGTCG AGTATGAAGA GGTGCCAGCT
CAGTTAATTA ATGCCGTACT CGACACTGAA GATGCGCGCT TTTTTGAACA TAATGGTATT
GATCCGATTG GTATTATCCG CGCGGCACTT ATTTTAGTCA CAACAGGTAA GAAAAGCCAA
GGTGCGAGTA CAATTACGCA ACAGGTTGCT CGAGGCTTTT TCTTATCTAA CGAAAAAACA
TATATTCGTA AAGTGAAAGA AATCTTTCTT GCGCTAAAAA TTGAAAAAGC ATTATCGAAA
AAGGAAATTT TAGCCCTTTA TTTAAATCGT TCATTCCTCG GAAATCGCGC TTATGGTGTC
GGTGCGGCGG CTCAAGTTTA TTATGGTAAA GAACTTAGCC AATTGACACT GCCAGAAATG
GCGATGATAG CTGGCCTACC GCAAGCTCCG TCTGCAGCGA ATCCAATTAG AAACCAATCA
CGTGCGATAG CTCGTCGTAA CTGGGTATTG AGCCGTATGC TAGAGAAACG AAATATTACT
CAAGCAGAAT ATCAAGAGGC TATTAGTAGT CCGTCGACAG CGAAATACCA TGGCGCTGAA
ATTGATTTAT ACGCTCCGTA TGTTTCGGAA ATGGCGCGTG ATTACATGAT CCAGAAATAC
GGTGAAGAAG CAGCCTATAC TAACGGTTAC AATGTCTACA CCACGATCTC ATCCGATCTC
CAATTGATGG CGCAGGAGTC TTTAAGAGAT AACGTTTTTG CTTATGACCA GCGTCATGGC
TTCCGTGGGC CTGTCGCTGA ATTATGGACT GATACTCCGC TAGAACATGA TGAAATCATC
GCAATTTTAA AACGAACGTC TTCAATGCAG GGCATTATGC CGGCCGCGGT TATCAGTGTA
AAAGATCAGC AAGCACAAGT CATTGATGAC AAAGGCGAAC TGATTACACT GGAATGGAAA
GGCCTAAAAT GGGCTCGTAA GTTTATAAGC GATAAACGCC AAAGCTTACC TCCGAAGCAA
GCCAGCGATA TATTGACCGC CGGCCAACAA GTGTGGATCC GTCATAATGG TAAACATTGG
CAGTTGTCTC AAATACCGCA AGTGTCTAGT GCGACAGTGT CACTTGAACC TCATGACGGT
GCCATTAAAA CCCTCGTCGG TGGATTTAGC TTTAGTCAAA GTCAATTCAA TCGTGTGACT
CAAGCTAAAC GCCAATTAGG TTCCAATATT AAGCCTTTTA TTTATGCCGC AGCATTAGAA
AAAGACTACA CATTGGCTAC GCTTATCAAT AACGCTCCGA TTAATAAACC AGACACCCGC
CAGGGCACAG CGTGGCGTCC TAAAAATTCA CCAGACATCT ATGGTGGCCC AACACGCTTA
CGAGTCGGTT TAGCGCAATC TATTAACGTT ATGTCAGTGA GAGCCATGCG TCACACCGGT
TTAGATGACA CCATCAAAAA ACTAATCCAA TTTGGTTTTG ACCCGAATGA TTTACCTCGA
AATGAATCAT TAGCATTGGG TTCACCTTCA GTGACACCGT TACAGGTCGC CACTGCATTT
AATAGCTTTG CAAATGGTGG TTATTTAGTT GAACCTTACT TTATCGATCA CGTGACCGAC
TCATACGACA ACACGATTGA ACAAACCATT CCCGCTATTG CATGTAGCAA ACCAGCACCC
TCTGTTGAAG ATGATGTGGT TATTGAAGAT CCATTTGCTG CGATGGCTGA AGAATTCTCT
CAGCAAACTC CTGAAGCATC AGTAGATACA TTAGATGGAG AGGTTGAAGC AACGTCCATT
ACCGCTGAAC AAAACATTTG CAGTAATCCA CAAGCTCGCT TTGCTAAGCG AGTCGTTTCA
GAACAAACTG CATTTTTGAT CACTGAAGCG CTAAAGAGCG TAATTTGGGG TGGCGGCGAT
TGGAGCAAAG GTACAGGTTG GAATGGTACC GCTTGGCGTG CATCTAAATT AATTAAGCGT
CATGACATTG CGGGTAAAAC AGGTACAACT AACGAATCTC GAGACACTTG GTTCAGTGGT
TTTAACCCTA CACTTACAGC AACTTTCTGG GTTGGCTTTG ATGACCATGG ACGTCAACTG
GGACGCTCAA GCTGGAGAGC TAACGGCGAA CCAGATCAAA TATCAGGTGC TGAGGCGGGT
GCTAAAACGG CAGGTCCTGG TTGGAATGAC TATATGAATA AGGCCCTGTC TGGTACCCCT
GAAGCTTCAG TTATCCCGCC AAAAGGAATT GTATCTGCGC GTATTGATTT AGCCACTGGC
AAATTGACTC GCAAGACAGA CCACACTACC GAGTTTGAGT ATTTTGTTGA AGGTACAGAA
CCCAAAGAAT ATGTTACTGA AACACAGCAA AGTGGCGATA TTTTTATCGA CAATGTTGCT
GAAGATTTAT TTCAATAA
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| Protein sequence | MFYFTKNSPA YILPLLFVIF WNYRVKWFKR LLIAFFSLSL LGIAAIAAAY FYVLPDLPDV
NSLKTVQLQT PLRIYSRDGK LISQFGEKRR IPVEYEEVPA QLINAVLDTE DARFFEHNGI
DPIGIIRAAL ILVTTGKKSQ GASTITQQVA RGFFLSNEKT YIRKVKEIFL ALKIEKALSK
KEILALYLNR SFLGNRAYGV GAAAQVYYGK ELSQLTLPEM AMIAGLPQAP SAANPIRNQS
RAIARRNWVL SRMLEKRNIT QAEYQEAISS PSTAKYHGAE IDLYAPYVSE MARDYMIQKY
GEEAAYTNGY NVYTTISSDL QLMAQESLRD NVFAYDQRHG FRGPVAELWT DTPLEHDEII
AILKRTSSMQ GIMPAAVISV KDQQAQVIDD KGELITLEWK GLKWARKFIS DKRQSLPPKQ
ASDILTAGQQ VWIRHNGKHW QLSQIPQVSS ATVSLEPHDG AIKTLVGGFS FSQSQFNRVT
QAKRQLGSNI KPFIYAAALE KDYTLATLIN NAPINKPDTR QGTAWRPKNS PDIYGGPTRL
RVGLAQSINV MSVRAMRHTG LDDTIKKLIQ FGFDPNDLPR NESLALGSPS VTPLQVATAF
NSFANGGYLV EPYFIDHVTD SYDNTIEQTI PAIACSKPAP SVEDDVVIED PFAAMAEEFS
QQTPEASVDT LDGEVEATSI TAEQNICSNP QARFAKRVVS EQTAFLITEA LKSVIWGGGD
WSKGTGWNGT AWRASKLIKR HDIAGKTGTT NESRDTWFSG FNPTLTATFW VGFDDHGRQL
GRSSWRANGE PDQISGAEAG AKTAGPGWND YMNKALSGTP EASVIPPKGI VSARIDLATG
KLTRKTDHTT EFEYFVEGTE PKEYVTETQQ SGDIFIDNVA EDLFQ
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