Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0346 |
Symbol | |
ID | 4277154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 374361 |
End bp | 375923 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638133100 |
Product | histidine ammonia-lyase |
Protein accession | YP_749047 |
Protein GI | 114561534 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2986] Histidine ammonia-lyase |
TIGRFAM ID | [TIGR01225] histidine ammonia-lyase [TIGR01226] phenylalanine ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAACA CTTCTTCACC GTCATCATCT GCCGAAAAAA CGGTGCATTT AGGCCAAAGC TACCTGAGCC TTGAACAAGT GGTCGCTGTC GCCAAGGGCG CAACGGTCAA ACTAGCGGAT GCTGCAGACT ATGTTGAATA TATTCAAAAA GGCGCCCGTT TCATCGACAG TTTGTTACAT GAAGAAGGCG TGGTATATGG CGTCACCACA GGTTACGGTG ACTCTTGTAC CGTCAATGTC AGCTTAGACT TAGTCCATGA ATTACCGCTG CATTTAACCC GTTTTCATGG TTGTGGTTTA GGTGATGTAT TTAGCCCAAT GCAAGCCCGC GCGATTATGG CTTGCCGTTT AAATTCATTG GCGGTGGGTA AGTCAGGTGT CAGCTATCTG CTGCTGCAGC GCATTGAATG GCTATTAAAT AACGATATCA CCCCGGTTAT TCCTCAAGAA GGTTCGGTTG GCGCCAGCGG CGATTTAACC CCTCTATCTT ATCTTGCTGC AGTACTTGTT GGCGAACGTG AGGTCATATA CCAAGGTAAA CGCCAAGCGA CCAAAGATGT TTATCTGAAA TTCGGCATGA TGCCATTAAC TCTGCGCCCT AAAGAAGGCC TCGCGTTAAT GAATGGCACA GCAGTGATGA CCGCACTGGC CTGTTTAGCC TATGACCGAT CGCAGTACTT AACTCGTTTA TCAAGCCGTA TTACTGCCAT GGCATCGTTA ACGCTTAAAG GCAACGCAAA TCATTTTGAT GAAATTTTGT TTGCCGCCAA ACCCCATCCA GGACAAAACC AAATTGCCAG TTGGATCCGC GAAGACTTAA ATCATCATGC GCATCCACGT AATTCTGACC GCTTACAAGA CCGCTATTCC ATTCGCTGTG CACCGCACAT CATTGGCGTA CTGCAAGATG CTTTACCTTT TATGCGTCAG TTTATTGAAA CCGAACTCAA TAGCGCTAAC GACAACCCGA TTGTCGATGC CGAGGGCGAA CATATCCTCC ATGGCGGTCA CTTTTATGGC GGCCACATTG CCTTTGCCAT GGATGCGATG AAAAATGCGG TGGCCAATAT CGCCGACTTA ATTGATCGTC AAATGGCCTT AGTCATGGAC CCTAAATTCA ACAATGGTTT ACCGGCTAAT TTATCTGCCG CAGAAGGCGA ACGTCGCGCC ATTAACCATG GTTTTAAAGC GGTACAAATC GGTGTTTCGG CTTGGACTGC TGAAGCATTA AAAAATACCA TGCCTGCCAG TGTGTTTTCA CGTTCAACTG AATGCCACAA CCAAGACAAA GTGAGCATGG GCACCATTGC CGCACGCGAT TGCATGCGGA TTTTACAACT GACAGAGCAA GTGGCTGCCG CCGCATTATT GGCCATGAGC CAAGGCATTC AACTACGCGT TATACAGAAA GAGTTAGACC CCAATTCACT AACACCATCA CTTGCCAATA CTTTGGCCCA AGTCAGTGAA GATTTTGAAC TGCTTACCGA AGACCGTCCA TTAGAAGCAG TACTACGCCA AACAGTCGAC AAAATTCAAC TAGGCCTGTG GGAGGTGTGT TAA
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Protein sequence | MSNTSSPSSS AEKTVHLGQS YLSLEQVVAV AKGATVKLAD AADYVEYIQK GARFIDSLLH EEGVVYGVTT GYGDSCTVNV SLDLVHELPL HLTRFHGCGL GDVFSPMQAR AIMACRLNSL AVGKSGVSYL LLQRIEWLLN NDITPVIPQE GSVGASGDLT PLSYLAAVLV GEREVIYQGK RQATKDVYLK FGMMPLTLRP KEGLALMNGT AVMTALACLA YDRSQYLTRL SSRITAMASL TLKGNANHFD EILFAAKPHP GQNQIASWIR EDLNHHAHPR NSDRLQDRYS IRCAPHIIGV LQDALPFMRQ FIETELNSAN DNPIVDAEGE HILHGGHFYG GHIAFAMDAM KNAVANIADL IDRQMALVMD PKFNNGLPAN LSAAEGERRA INHGFKAVQI GVSAWTAEAL KNTMPASVFS RSTECHNQDK VSMGTIAARD CMRILQLTEQ VAAAALLAMS QGIQLRVIQK ELDPNSLTPS LANTLAQVSE DFELLTEDRP LEAVLRQTVD KIQLGLWEVC
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