Gene Sfri_0335 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0335 
Symbol 
ID4277143 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp362853 
End bp363464 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content39% 
IMG OID638133089 
Productelectron transport protein SCO1/SenC 
Protein accessionYP_749036 
Protein GI114561523 
COG category[R] General function prediction only 
COG ID[COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAA ACAAAATTGT CATCGCGTCA GCTTTAATTC TGCTCGCTGT GAGTCTTGTT 
CCTATATTGA TGTTGATTAA TCAATGGGAT TCAGGTTCGC AGAGCTATGG AATTACCACT 
AGTGATAGCC AGCAGATTCA TTTTCGGTGG CAAGACGTTA ATCAACAAGT TCACCAGTAC 
CCTACGTCCG CGGGAACGTA TACCTATTTA TTTTTGGGCT TTTTGTCGTG CTCAGAAATT 
TGTCCAATAC GTATTGAGCA ATTAAATCAA CTTGAACAAC GAATAGAGCA GGATGCTTCG 
TTTAATAAAG CTGAGGTTCA ATTTCTATTT GTGACTATTG ACCCTGATAA CGACACATTA 
GCCTTGCGCC AAGCGGTGAT CGATGCACGC TCTACGCATT TTGTCAGTGC GTCATTGTCC 
GAGTCAGATT TACATCAACT TGAATTGCGC TTATCGGACA ATATCAATCG GCAACTCGCC 
ACCATCAATC ATGTTGGCAA TCTATTTTTG TTGAATCCAA ATGGACAAAT CGCACGTATT 
TATACGGCTA AACAACTTTC AATATCCAAG ATGTTGATTG ATCTTAACCA TATTATTTCA 
TCTCAACTTT AG
 
Protein sequence
MKINKIVIAS ALILLAVSLV PILMLINQWD SGSQSYGITT SDSQQIHFRW QDVNQQVHQY 
PTSAGTYTYL FLGFLSCSEI CPIRIEQLNQ LEQRIEQDAS FNKAEVQFLF VTIDPDNDTL 
ALRQAVIDAR STHFVSASLS ESDLHQLELR LSDNINRQLA TINHVGNLFL LNPNGQIARI 
YTAKQLSISK MLIDLNHIIS SQL