| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0320 |
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| Symbol | |
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| ID | 4277407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 349239 |
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| End bp | 350651 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638133074 |
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| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
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| Protein accession | YP_749021 |
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| Protein GI | 114561508 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATTA GTGAACAAGT TTGGATCCTC GATGATGATA GTTCAATCCG TTGGGTTCTC
GAAAAAGCCC TTAAAGGCGC ATCACTGTCA ACGGCTAGCT TTGCTGCTGC AGAATCCTTG
TGGCAAGCTT TAGAAGCATC ACAACCTCAA GTCATCGTGT CAGACATCCG CATGCCAGGT
ACTGACGGCT TAACCTTACT AGATCGCTTA CAACTGCATT ATCCGCATAT TCCAGTGATC
ATCATGACCG CCCACTCAGA CTTAGACAGT GCGGTGAGCG CATATCAAGC AGGTGCATTT
GAATACCTAC CAAAACCATT TGATATTGAT GAAGCGATTA ATTTAGTTGA ACGCGCACTC
ACACATGCAA CAGAGCAAGC GCCACAACCT GTGATTGATA CCACCATAAA AACCCCTGAA
ATTATTGGTG AAGCCCCGGC AATGCAAGAA GTGTTTCGTG CCATTGGTCG ATTATCTCGC
TCATCAATTA GTGTGCTTAT CAATGGTCAA TCTGGTACCG GTAAAGAATT AGTCGCTGGC
GCATTACACA AACACAGCCC TCGTAAGGAC AAGCCCTTTA TTGCATTAAA TATGGCTGCT
ATCCCCAAAG ATTTGATTGA ATCTGAACTC TTTGGCCATG AAAAAGGCGC TTTTACTGGT
GCAGCCAACG TACGCCAAGG CCGTTTTGAA CAAGCCAATG GTGGCACGCT ATTTTTAGAT
GAAATTGGTG ATATGCCAAT CGATGTGCAA ACGCGATTAT TACGAGTACT TGCCGACGGT
CAGTTCTATC GTGTCGGCGG TCATCAAGCT GTGCAAGTTG ATGTGCGAAT TATTGCTGCG
ACGCATCAAA ATCTTGAGGT ACAGGTACAA AAAGGCACCT TCCGCGAAGA TTTATTTCAT
CGCCTCAATG TGATCCGAGT GCACTTACCG CCGTTATCGC AACGCCGTGA AGACATTGCC
CAACTCGCCA ATCACTTTTT AAACACGGCT GCGAAAGAGA TTGGCGTTGA ACCCAAAATA
CTCACCAAAG AAACAGCCGT AAAGTTGGCT AATTTACCTT GGCCGGGCAA TGTTCGCCAA
CTTGAGAATA CTTGTCGTTG GTTAACAGTG ATGGCGTCCG GACAAGAAAT TTTACCGCAA
GATTTACCAC CAGAATTGCT TAAAGATCCA ATTGCAACCC AGCAGAAACA GGTTGGAGCA
AGTGACTGGC AAACCGCACT CACTGATTGG ATTGATGAAA AGTTGGCTGC AGGTGAAAGT
GATTTGCTCA CTGAAGTGCA ACCTGAATTT GAACGTATTT TACTTGAAAC AGCACTAAGA
CATACTCAAG GTCATAAACA AGAAGCCGCT AAACGCCTAG GTTGGGGCCG CAACACCCTA
ACGCGTAAAT TGAAAGAACT GTCGATGGAT TAA
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| Protein sequence | MNISEQVWIL DDDSSIRWVL EKALKGASLS TASFAAAESL WQALEASQPQ VIVSDIRMPG
TDGLTLLDRL QLHYPHIPVI IMTAHSDLDS AVSAYQAGAF EYLPKPFDID EAINLVERAL
THATEQAPQP VIDTTIKTPE IIGEAPAMQE VFRAIGRLSR SSISVLINGQ SGTGKELVAG
ALHKHSPRKD KPFIALNMAA IPKDLIESEL FGHEKGAFTG AANVRQGRFE QANGGTLFLD
EIGDMPIDVQ TRLLRVLADG QFYRVGGHQA VQVDVRIIAA THQNLEVQVQ KGTFREDLFH
RLNVIRVHLP PLSQRREDIA QLANHFLNTA AKEIGVEPKI LTKETAVKLA NLPWPGNVRQ
LENTCRWLTV MASGQEILPQ DLPPELLKDP IATQQKQVGA SDWQTALTDW IDEKLAAGES
DLLTEVQPEF ERILLETALR HTQGHKQEAA KRLGWGRNTL TRKLKELSMD
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