| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0290 |
|---|
| Symbol | |
|---|
| ID | 4278565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 319895 |
|---|
| End bp | 321751 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638133044 |
|---|
| Product | TrkA domain-containing protein |
|---|
| Protein accession | YP_748991 |
|---|
| Protein GI | 114561478 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0471] Di- and tricarboxylate transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACAGCAA TTAATATAAC GACTTTGCCA CCGCTTCCTG ATGCGCATGC ACTGGCTGTG
TTATTGCTTG TGTTGCTTGC CCTGTTTCTA TTTACCAGAG AATCTATTGC CATTGAGACC
TCGAGTCTGT TTATTCTGGC AATGTTGAGC ATCGGTTTTA CAGTTTTTCC TTACGTCAAT
TCGCAGGGGC AACATCTTGA AGCGTTGCAG TTTTTCAGTG GTTTTGGCCA TGAAGCGCTG
GTGGCTGTGT GTGCCTTAAT GATTGCCGGA AATGGTTTAG TGCGCACCGG AGCGCTAGTA
CCTCTTGGGC GAATTCTGGC GCGCTTATGG CTTGTTAGCC CAGCATTGAG TATGTTGCTG
ACCTTGCTGG TTGGCGCTTT TCTGAGTGCA TTTGTTAATA ATGTACCGAT AGTCGTACTG
CTGCTTCCTA TTCTAATCAG TGTATCGCTG CGAACCGGAG AGCCAGCTTC GGGGATGTTA
ATGCCAATGG GATTTGCCAC TCTGGTTGGA GGCATGAGTA CCAGTATTGG CACCTCGACT
AATTTGTTAG TTGTTTCAGT TGCTGCAGAT ATGGGCTTAA GAAGACTGCA GATGTTTGAT
TTTTTTGTAC CGGCAGCAAT CGTTGCCGCT ATTGCTATTG TTTATTTATG GTTGATTGCG
CCACGCTTAC TGCCTGCTCG TAAGGCCATA CTCAGCGATA CCTCCCCAAG AATATTTACT
GCCCAACTGG TTATATTGGA AGACGGTTTT GCAGTCGGTA AGACATTAAC CGAACTGATT
GAAAAGAGCT CAGGTTTGCT GGAAGTATCA CGGATTATGC GGGGCACTGG AACCTATGTT
GTACCGTTGC CCGATGCGCA AATTCAGGCT GGGGATCGGT TGATGGTGAA TGACACTCCG
GAAAATTTGA AGGAACTTGA AAGTGCTCTG GATGCCATGC TCTATGTCGG AGATACGCCT
GTTGATGAAG AGCATCCATT ATCCGGTGAG GGACAGCAGA TTGCCGAAAT AGTCGTCATG
CAAGGTTCAC CTTTGCTTGG TATGACCTTG AGGCAACTTA ACTTTTATGA TCGTTATCAA
TTAATGGTGC TGGCAATACA TCGAGAGGGA AACTCAGTAG AGACGCTGCG TGAAAAAATA
GCACAGGCCC GTTTGCGCAT TGGTGATGTT CTTTTAGTGC AGGGAGATCA AGATACCATT
GGCGAAATCA AACGTGCTGG AGAGCTATTA GTGCTTGATG CCACCGCAGA TCTTCCGTAC
ACGGATAAAG CGGTAACGGC TTTACTGATT ATGGCGGCAA TTATTCTTGT GTCTGCATTT
GGGGATGTTC CCATTGCGAT AAGCGCCGTA GGTGGTGTGC TGCTTATGCT GGTCACACGC
TGCCTAACCT GGCGTCATGC TTCTATGGCG CTAAGTACTC AGGTCATTTT GATTGTGGCG
GCGAGTTTGG CTATGGGATC GGCATTATTA AAAACCGGTG GTGCAGAGTA TTTAGCACAA
GTCTTTGTCG CGTTAACCGC AGGGGCTTCT CCGGCGGTTA TTGTATCTGG ACTGATGTTG
CTAATGGCCA TTATGACCAA TATTGTGTCC AATAATGCTG CGGCAGTCAT AGGCACACCT
ATTGCTATCA GCATTGCGCA GCAACTGCAG GTTAACCCTG AACCTTTTGT TATTGCGGTG
CTATTTGGTG CAAATATGAG TTATGCCACC CCTATGGCTT ATAAGACTAA CCTGCTGGTA
ATGCATGCGG GCGGCTATAA ATTTACCGAT TTTGTCCGAG TGGGCGTTCC ACTAACGATT
ATCGTTTGGC TGAGTTTATC GCTATTACTG CCAGTCATGT ATTCGCTTAG CTGGTAA
|
|---|
| Protein sequence | MTAINITTLP PLPDAHALAV LLLVLLALFL FTRESIAIET SSLFILAMLS IGFTVFPYVN
SQGQHLEALQ FFSGFGHEAL VAVCALMIAG NGLVRTGALV PLGRILARLW LVSPALSMLL
TLLVGAFLSA FVNNVPIVVL LLPILISVSL RTGEPASGML MPMGFATLVG GMSTSIGTST
NLLVVSVAAD MGLRRLQMFD FFVPAAIVAA IAIVYLWLIA PRLLPARKAI LSDTSPRIFT
AQLVILEDGF AVGKTLTELI EKSSGLLEVS RIMRGTGTYV VPLPDAQIQA GDRLMVNDTP
ENLKELESAL DAMLYVGDTP VDEEHPLSGE GQQIAEIVVM QGSPLLGMTL RQLNFYDRYQ
LMVLAIHREG NSVETLREKI AQARLRIGDV LLVQGDQDTI GEIKRAGELL VLDATADLPY
TDKAVTALLI MAAIILVSAF GDVPIAISAV GGVLLMLVTR CLTWRHASMA LSTQVILIVA
ASLAMGSALL KTGGAEYLAQ VFVALTAGAS PAVIVSGLML LMAIMTNIVS NNAAAVIGTP
IAISIAQQLQ VNPEPFVIAV LFGANMSYAT PMAYKTNLLV MHAGGYKFTD FVRVGVPLTI
IVWLSLSLLL PVMYSLSW
|
|---|
| |