| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0278 |
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| Symbol | |
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| ID | 4278081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 306788 |
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| End bp | 307645 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133032 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_748979 |
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| Protein GI | 114561466 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000247348 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTTATC AAACGCAATC AATGGCGCTG GCGGTTCCAC ACAATGCTAG TAGCCTAGAA
GCGTACATCC AGTCTGTGAC CAGCATCAAT ATGTTGGACG CAGATACAGA GTACGACATC
GCCAAGCGTT TACAAGAAAA TGGCGACCTA CAAGCGGCAA AACAATTAAT TATGTCGCAT
CTTCGTTTTG TTGTGCATGT TGCAAAAGGT TATTCAGGAT ACGGCTTACC ACAGGCAGAT
CTTATTCAAG AAGGTAACAT TGGTTTGATG AAAGCGGTTA AACGCTTCGA CCCAGATGTT
GGTGTTCGCC TTGTGTCTTT TGCGGTGCAT TGGATTAAAG CTGAAATTCA TGAATACGTG
TTGAAAAACT GGCGTATCGT GAAAGTAGCG ACCACTAAAG CACAGCGTAA ATTATTCTTT
AATATTCGTA AGTCTAAAAA GCGTTTAGGT TGGTTTAGTG ACGCTGAAGT GACAATGGTT
GCAGAGAATT TAGGTGTATC GAAAGCAGAC GTGACCGAAA TGGAATCACG AATGGCAGCT
CAAGATCCGG CCTTCGACTT AACCAATGAC AGCGATGACG ACCATCATGA TTTTGCCCCT
GCATTATATT TAGAAGATCA TTCTTCAGAT GTGGCAGATC AGGTTGAACA CGCCAATTGG
GAAGCAGACT CTCAAACACG CTTATTATCG GCAATTAAAA CCTTAGACGA ACGTAGTCAG
CATATATTAC GTGCGCGTTG GTTAGATGAT ACTAAAGTGA CTTTGCAAGA ACTTGCATCG
ACTTATGAAG TCTCTGCTGA GCGAATCAGA CAGCTAGAAA AGAATGCTAT GAACAAGCTT
AAATCTTGTA TGGAGTAA
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| Protein sequence | MTYQTQSMAL AVPHNASSLE AYIQSVTSIN MLDADTEYDI AKRLQENGDL QAAKQLIMSH
LRFVVHVAKG YSGYGLPQAD LIQEGNIGLM KAVKRFDPDV GVRLVSFAVH WIKAEIHEYV
LKNWRIVKVA TTKAQRKLFF NIRKSKKRLG WFSDAEVTMV AENLGVSKAD VTEMESRMAA
QDPAFDLTND SDDDHHDFAP ALYLEDHSSD VADQVEHANW EADSQTRLLS AIKTLDERSQ
HILRARWLDD TKVTLQELAS TYEVSAERIR QLEKNAMNKL KSCME
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