Gene Sfri_0260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0260 
Symbol 
ID4277031 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp287049 
End bp287663 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content44% 
IMG OID638133014 
ProductLexA repressor 
Protein accessionYP_748961 
Protein GI114561448 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) 
TIGRFAM ID[TIGR00498] SOS regulatory protein LexA 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.712768 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGACCGT TAACGCCGCG CCAAGCAGAA ATTTTAGACT TAATTAAAAA CAATATCGCC 
GAAACAGGTA TGCCACCCAC TCGTGCTGAA ATTGCGAATC GTCTTGGCTT TAAAAGTGCT
AATGCCGCCG AAGAGCATTT AAAAGCATTA GCCAAAAAAG GCTTTATCGA GATCATGCCT
GGGACCTCAA GAGGCATTCG TTTACCTCAA GAAGAACAGG TTGAAACCGG TCTGCCACTG
ATTGGACAGG TTGCTGCTGG TGAACCAATT TTGGCTCAAG AGCATGTAGA GCAATACTAT
CAAGTCGATC CAAACATGTT TAAGCCCGCC GCAGATTTTT TGCTGCGAGT ACGTGGTGAC
AGCATGAAAA ATATCGGAAT TTTAGAAGGC GACTTACTCG CTGTACATAA AATGCAGCAA
GCACGTAATG GCCAGGTTGT TGTGGCACGT GTTGATGATG ACGTCACCGT AAAACGATTT
GAACAAAAAG GTAATGTGAT TTATCTGCAT GCCGAAAATG AAGATTACAA TCCGATAAAA
GTAGATTTAA GTTGCCAAAG CCTAACCATC GAAGGGCTTG CCGTTGGCGT TATCCGTAAT
GGAGATTGGT TATGA
 
Protein sequence
MRPLTPRQAE ILDLIKNNIA ETGMPPTRAE IANRLGFKSA NAAEEHLKAL AKKGFIEIMP 
GTSRGIRLPQ EEQVETGLPL IGQVAAGEPI LAQEHVEQYY QVDPNMFKPA ADFLLRVRGD
SMKNIGILEG DLLAVHKMQQ ARNGQVVVAR VDDDVTVKRF EQKGNVIYLH AENEDYNPIK
VDLSCQSLTI EGLAVGVIRN GDWL