Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0247 |
Symbol | |
ID | 4277018 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 274921 |
End bp | 276264 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638133001 |
Product | MATE efflux family protein |
Protein accession | YP_748948 |
Protein GI | 114561435 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAATTA GCGCATTACT ATTAAACCGC CAAAAAAATC GTCAATTATT GGCTTTAGCG ACACCAATGA TACTGTCGAA TATCACTATT CCGCTATTAG GATTAGTTGA TACTGCGGTG ATTGGTCATC TTGGACAAGC TTACTATCTT GGTGGCGTAG CGCTAGGCAG TACCATTATC ACCTTGATGA TTTGGTTACT CGGCTTTTTA CGCATGTCCA CCACCGGGCT GGTCGCACAA GCCTACGGTG CTAATGATAC CTCAACTCAA CAACAATTAC TGATACAAGG TTGCAGCCTA GCATTAACCT TGGGTGTAGC TTGTGTAATA TTACACTCTC CCATACTTGA TTTAGCATTA AGCCTCAGCG ATGCCAGCGA ACAAGTGATG TTCTACTGCC GCCAATACGT CGAAATCCGA ATCTGGTCAC TGCCTTTTGC TCTCGTCAAC TTAGTGTTAT TAGGCTGGTT ACTCGGACGC CAAGCGCCAA AAGCTGCTAT GTGGCAATTA ATTATCGCTA ACAGCGCTAA TATTATTCTC GATATTGTGT TTGTCATCAT CTTTAAATGG AATGTCCAAG GTGCAGCATT GGCATCTGTT ATTGCTGATA TCAGTGCTTT TTCAGTGGCA TTGATTATGG TAAAGCGCCA ACTGGTGCAC ACTGGTGGGC TTAATTTAAG CCAGGTTATC GCACATTTAT CATGGCGCGG ATATGCTCGT TTACTCACCT TAAACCGTGA TATTTTTATC CGCAGTTTGT GCTTGCAAGC CGCCTTTAGT TTTATGACCT TTTATGGTGC CGGTTTAGGC GACAATACTA TTGCCGCCAA CGCAGTACTG CTTAATTTAC TGATGCTGAT CTCTTATGCG TTAGATGGTA TAGCCTATTA TGCTGAAGCC GAAGTAGGCC GCGCATTTGG TCAAAAAAAT CCAACACTAC TGCATGACAG TGTTGTATTG GCTTTTTGCT GGTCGGCAAT GGTTGCGGTG TTATTTAGCC TGCTTTTTTG GTCGGTAGGA CCATGGATAA TTCAGCTATT AACCAATATT GAAGCGGTAC AAAACACCGC AAACATCTAC TTAATCTGGC TCATTTTTAT GCCTATCTTG GCATTTGGCT GTTATCTGTT TGATGGCGTG TATATTGGTG CTGCACACGG GAGTATTATG CGTAACAGCA TGATAATTGC TACCTTTGGC GTTTACTTTC CGAGTTGGTA TCTATTGCAA GATTGGGGCA ACCACAGCCT TTGGGCTGCG ATGTCAATAT TCATGCTATG CCGAAGCGTA ACTCTTGGCT GGCACTATTA CTACAAACTC AGATATCAAC TGGCGGCCGC ATAA
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Protein sequence | MSISALLLNR QKNRQLLALA TPMILSNITI PLLGLVDTAV IGHLGQAYYL GGVALGSTII TLMIWLLGFL RMSTTGLVAQ AYGANDTSTQ QQLLIQGCSL ALTLGVACVI LHSPILDLAL SLSDASEQVM FYCRQYVEIR IWSLPFALVN LVLLGWLLGR QAPKAAMWQL IIANSANIIL DIVFVIIFKW NVQGAALASV IADISAFSVA LIMVKRQLVH TGGLNLSQVI AHLSWRGYAR LLTLNRDIFI RSLCLQAAFS FMTFYGAGLG DNTIAANAVL LNLLMLISYA LDGIAYYAEA EVGRAFGQKN PTLLHDSVVL AFCWSAMVAV LFSLLFWSVG PWIIQLLTNI EAVQNTANIY LIWLIFMPIL AFGCYLFDGV YIGAAHGSIM RNSMIIATFG VYFPSWYLLQ DWGNHSLWAA MSIFMLCRSV TLGWHYYYKL RYQLAAA
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