Gene Sfri_0247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0247 
Symbol 
ID4277018 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp274921 
End bp276264 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content44% 
IMG OID638133001 
ProductMATE efflux family protein 
Protein accessionYP_748948 
Protein GI114561435 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAATTA GCGCATTACT ATTAAACCGC CAAAAAAATC GTCAATTATT GGCTTTAGCG 
ACACCAATGA TACTGTCGAA TATCACTATT CCGCTATTAG GATTAGTTGA TACTGCGGTG
ATTGGTCATC TTGGACAAGC TTACTATCTT GGTGGCGTAG CGCTAGGCAG TACCATTATC
ACCTTGATGA TTTGGTTACT CGGCTTTTTA CGCATGTCCA CCACCGGGCT GGTCGCACAA
GCCTACGGTG CTAATGATAC CTCAACTCAA CAACAATTAC TGATACAAGG TTGCAGCCTA
GCATTAACCT TGGGTGTAGC TTGTGTAATA TTACACTCTC CCATACTTGA TTTAGCATTA
AGCCTCAGCG ATGCCAGCGA ACAAGTGATG TTCTACTGCC GCCAATACGT CGAAATCCGA
ATCTGGTCAC TGCCTTTTGC TCTCGTCAAC TTAGTGTTAT TAGGCTGGTT ACTCGGACGC
CAAGCGCCAA AAGCTGCTAT GTGGCAATTA ATTATCGCTA ACAGCGCTAA TATTATTCTC
GATATTGTGT TTGTCATCAT CTTTAAATGG AATGTCCAAG GTGCAGCATT GGCATCTGTT
ATTGCTGATA TCAGTGCTTT TTCAGTGGCA TTGATTATGG TAAAGCGCCA ACTGGTGCAC
ACTGGTGGGC TTAATTTAAG CCAGGTTATC GCACATTTAT CATGGCGCGG ATATGCTCGT
TTACTCACCT TAAACCGTGA TATTTTTATC CGCAGTTTGT GCTTGCAAGC CGCCTTTAGT
TTTATGACCT TTTATGGTGC CGGTTTAGGC GACAATACTA TTGCCGCCAA CGCAGTACTG
CTTAATTTAC TGATGCTGAT CTCTTATGCG TTAGATGGTA TAGCCTATTA TGCTGAAGCC
GAAGTAGGCC GCGCATTTGG TCAAAAAAAT CCAACACTAC TGCATGACAG TGTTGTATTG
GCTTTTTGCT GGTCGGCAAT GGTTGCGGTG TTATTTAGCC TGCTTTTTTG GTCGGTAGGA
CCATGGATAA TTCAGCTATT AACCAATATT GAAGCGGTAC AAAACACCGC AAACATCTAC
TTAATCTGGC TCATTTTTAT GCCTATCTTG GCATTTGGCT GTTATCTGTT TGATGGCGTG
TATATTGGTG CTGCACACGG GAGTATTATG CGTAACAGCA TGATAATTGC TACCTTTGGC
GTTTACTTTC CGAGTTGGTA TCTATTGCAA GATTGGGGCA ACCACAGCCT TTGGGCTGCG
ATGTCAATAT TCATGCTATG CCGAAGCGTA ACTCTTGGCT GGCACTATTA CTACAAACTC
AGATATCAAC TGGCGGCCGC ATAA
 
Protein sequence
MSISALLLNR QKNRQLLALA TPMILSNITI PLLGLVDTAV IGHLGQAYYL GGVALGSTII 
TLMIWLLGFL RMSTTGLVAQ AYGANDTSTQ QQLLIQGCSL ALTLGVACVI LHSPILDLAL
SLSDASEQVM FYCRQYVEIR IWSLPFALVN LVLLGWLLGR QAPKAAMWQL IIANSANIIL
DIVFVIIFKW NVQGAALASV IADISAFSVA LIMVKRQLVH TGGLNLSQVI AHLSWRGYAR
LLTLNRDIFI RSLCLQAAFS FMTFYGAGLG DNTIAANAVL LNLLMLISYA LDGIAYYAEA
EVGRAFGQKN PTLLHDSVVL AFCWSAMVAV LFSLLFWSVG PWIIQLLTNI EAVQNTANIY
LIWLIFMPIL AFGCYLFDGV YIGAAHGSIM RNSMIIATFG VYFPSWYLLQ DWGNHSLWAA
MSIFMLCRSV TLGWHYYYKL RYQLAAA