Gene Sfri_0244 details

Gene Information

• Locus tag: Sfri_0244
• ID: 4278677
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 271862
• End bp: 272440
• Gene Length: 579 bp
• Protein Length: 192 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 638132998
• Product: putative DNA uptake protein
• Protein accession: YP_748945
• Protein GI: 114561432
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [S] Function unknown
• COG ID: [COG0316] Uncharacterized conserved protein; [COG0694] Thioredoxin-like proteins and domains
• TIGRFAM ID: [TIGR00049] Iron-sulfur cluster assembly accessory protein; [TIGR03341] IscR-regulated protein YhgI

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTACCA TTTCCGATAC AGCTCAGGCC CATTTCGTCA AACTATTGGC CGACCAGCCG 
GAAGGTACGC ACATTCGTGT GTTTGTTATC AGCCCAGGTA CTGCACAAGC AGAGTGTGGT 
GTGTCTTATT GTCCACCTGA TGCCGCTGAA GCTGATGATG TAGAACTTCC ATTTAATGGC 
TTTAGTGCTA TGGTCGATGA AAAGAGCGCA CCATTTTTAG ATGATGCCAG CATTGACTTT 
GTAACCGACC AGCTTGGTTC GCAACTAACA TTAAAAGCAC CTAACGCAAA AATGCGCAAA 
GTGTCTGGAG ATGCGCCATT AGTTGAACGT ATTGAATATA TTATTCAGTC AGAGATTAAT 
CCACAACTTG CTAGCCACGG CGGTAACATC ATGCTGGTAG AAATTACCGA AGCTGGTGTT 
GCAGTATTGC AGTTTGGCGG TGGGTGTAAC GGTTGCTCGC AAGTTGATAT CACCTTAAAA 
GATGGTATTG AGAAGCAATT GTTAGATATG TTCCCAACGG AATTGACTGG TGTTCGTGAC 
GTGACAGAGC ATGAGCATGG CGAGCATTCT TACGCTTAA 

 

Protein sequence

MITISDTAQA HFVKLLADQP EGTHIRVFVI SPGTAQAECG VSYCPPDAAE ADDVELPFNG 
FSAMVDEKSA PFLDDASIDF VTDQLGSQLT LKAPNAKMRK VSGDAPLVER IEYIIQSEIN 
PQLASHGGNI MLVEITEAGV AVLQFGGGCN GCSQVDITLK DGIEKQLLDM FPTELTGVRD 
VTEHEHGEHS YA