| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0235 |
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| Symbol | |
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| ID | 4278668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 259984 |
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| End bp | 262356 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638132989 |
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| Product | RNA-binding S1 domain-containing protein |
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| Protein accession | YP_748936 |
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| Protein GI | 114561423 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATAATA TTGCCCAGAT TATCGCTCAA GAACTTAATG TCCGTGAACA ACAGGTCACA
GCGACCATTG CGCTATTAGA TGATGGCGCC ACCGTGCCGT TTATTGCGCG CTATCGTAAA
GAAGCTACCG GTGGTTTAGA TGACACTCAG TTGCGTAACT TGTTTTCTCG TTTAGGTTAT
TTACGTGAGT TACACGACCG CCGCCAAGTG GTGTTGTCGA GCATTGATGC GCAAGGAAAA
TTAACCCCAG CGTTAACTCA AGCGATTAAT GACGCCGACA GTAAAACCCG CCTTGAAGAT
TTATATCTGC CATTCAAACC AAAGCGTCGT ACTAAGGGCC AAATAGCCAT CGAAGCGGGT
ATTGAGCCGC TTGTAGATGC AGTGCTAGCC AATCGTCAAT TAGATATAGA AAGTAAAGCA
ACTGAGTTTA TTAATCCTGA TGCGGGTTTT GCCGACTCTA AAGCGGTACT AGATGGTGCG
CGTTTTATTT TAATGGAGCG TTTTGCTGAA GATGCAGAGT TGCTGCGTAA AGTGCGCCAG
CATTTATTAC AGCAAGCTGT GCTTGAAAGC CGCATGGTAA AAGGTAAAGA AAAAGAAGGC
GCTAAATTCC GCGACTACTT TGAACATAAT GAGCTGATGA GTAAAATCCC ATCTCACCGT
GCTTTAGCCA TGTTGCGCGG TCGTAACGAA GGCATGTTAA GCCTATCGAT GAACGCCGAT
CCCGATACTC AAGCGACAGA AGGCAGTTAT TGTGAAGTGA TTATTAGCGA TCACTTTAAG
TTAGAACTGA CTAACTCTAG CGTTGATGAA TGGTTGAAAA CGGTTGTGAC CTCGACTTGG
CGCATTAAAG TTGCCTTGCA AATGGAAACA GAGTTTATCG CTAAGATGCG TGAAAGCGCG
GAAGAAGAGG CCATTAGAGT GTTTGCCCGT AACCTGGGCG ATTTATTAAT GGCGGCTCCT
GCTGGTGCTA AAGCAACTAT GGGACTCGAT CCTGGTATCC GTACTGGTGT GAAAGTCGCG
ATTGTTGATA ACACCGGTAA GCTGGTGGCC CACACCACTA TTTTCCCGCA TGCGCCACAG
AACTTATGGG ACAAATCGAT TCGTACCTTA AGTAATTTAG TGACCATGCA TAAAGTTGAA
ATTATTGCGA TTGGTAATGG TACTGGCTCG CGTGAGACCG ACAAGCTAAC TGGCGAGTTA
ATCGCTGCCG TGAAAGAAAC GCATCCGACG CTGACCAAAG TGATTGTGAG TGAAGCGGGC
GCATCGGTAT ATTCGGCCTC TGAGTTTGCC GCTAATGAGT TTCCTAATCT TGATGTGTCA
ATTCGTGGTG CGGTATCAAT TGCGCGTCGC TTACAAGATC CGCTGGCAGA GTTAGTAAAA
ATTGAACCCA AAGCAATTGG CGTAGGACAA TATCAGCATG ATGTAAGCCA AAGCCAGTTA
TCGCAGTCGC TTGAGGCCGT CGTTGAAGAC TGTGTTAACG CTGTAGGTGT TGATTTAAAT
ATGGCATCAG CGCCGTTATT AGCTCAAGTT GCTGGCTTAA CCAAAACCTT AGCTAAAAAC
GTGGTTGATT TTCGTGACGC TAATGGTCAA TTTACCAATC GTAAGCAGTT ATTGAGTGTG
GCTCGTTTAG GGCCTAAAGC TTATGAGCAA GCTGCGGGTT TTTTACGTAT CCGTAATGGT
GATAATCCAT TGGATTCATC ATCTGTTCAT CCAGAAGCTT ACAGCCTAGT TGAGTCGATT
GCTGGTGCTA AGCAATTGCC ATTAACTGAA CTGATTGGTA ATAGCGATTT GTTAAAACAG
ATTAATGCTG CCGATTTTGT TACCGACGCA TTTGGTGTGC CGACCATTAA TGATATTTTA
GCCGAACTAG ACAAACCAGG ACGCGACCCG CGTGGTGAGT TTAAAACGGC TACGTTTAAA
GACGGCATAG AAGAATTGAA GCACCTTAAA GTCGAGATGA TTTTAGAAGG TGTAGTCACC
AACGTGACCA ACTTTGGTGC CTTTGTTGAT GTGGGTGTGC ATCAAGATGG TTTAGTGCAT
ATTTCATCGT TAACCGACAA GTTTGTTAGT GACCCACATA CAGTGGTTAA AGCCGGTGAT
GTGGTTAAAG TGAAAGTGAT GGAAGTGGAT ATTGAGCGTC GTCGTATTGC GTTAAGCATG
CGTCTTGATG AAAAAATTGA TACTGAAAAA GCAATCAGAC AGTCGCAGGG TAAGCCACAA
AACAGTTACC AGAAAAAGCC TGCTGCGGGT AAATTTTCAG TCAATACCAA GAGTTCTGGT
CATAATAAAC CAGCCAGTAA ACCGGTTAAA GCACCACAAA ATGCGGCTAT GGGTAATGCG
TTTGCTGATG CCTTTGCCAA GATAAAAAAA TAA
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| Protein sequence | MHNIAQIIAQ ELNVREQQVT ATIALLDDGA TVPFIARYRK EATGGLDDTQ LRNLFSRLGY
LRELHDRRQV VLSSIDAQGK LTPALTQAIN DADSKTRLED LYLPFKPKRR TKGQIAIEAG
IEPLVDAVLA NRQLDIESKA TEFINPDAGF ADSKAVLDGA RFILMERFAE DAELLRKVRQ
HLLQQAVLES RMVKGKEKEG AKFRDYFEHN ELMSKIPSHR ALAMLRGRNE GMLSLSMNAD
PDTQATEGSY CEVIISDHFK LELTNSSVDE WLKTVVTSTW RIKVALQMET EFIAKMRESA
EEEAIRVFAR NLGDLLMAAP AGAKATMGLD PGIRTGVKVA IVDNTGKLVA HTTIFPHAPQ
NLWDKSIRTL SNLVTMHKVE IIAIGNGTGS RETDKLTGEL IAAVKETHPT LTKVIVSEAG
ASVYSASEFA ANEFPNLDVS IRGAVSIARR LQDPLAELVK IEPKAIGVGQ YQHDVSQSQL
SQSLEAVVED CVNAVGVDLN MASAPLLAQV AGLTKTLAKN VVDFRDANGQ FTNRKQLLSV
ARLGPKAYEQ AAGFLRIRNG DNPLDSSSVH PEAYSLVESI AGAKQLPLTE LIGNSDLLKQ
INAADFVTDA FGVPTINDIL AELDKPGRDP RGEFKTATFK DGIEELKHLK VEMILEGVVT
NVTNFGAFVD VGVHQDGLVH ISSLTDKFVS DPHTVVKAGD VVKVKVMEVD IERRRIALSM
RLDEKIDTEK AIRQSQGKPQ NSYQKKPAAG KFSVNTKSSG HNKPASKPVK APQNAAMGNA
FADAFAKIKK
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