| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0182 |
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| Symbol | |
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| ID | 4277584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 190402 |
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| End bp | 192372 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638132932 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_748883 |
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| Protein GI | 114561370 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00179413 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCCAG AACTTGGACA TTTCTCGCTA ATTCTCGGTT TGGCTTTTGC CTTACTGCTA
GCTAGCGTGC CGTTATATGG TTCCGCACGT AAAGACCAGT ATCTTGTTCG CTATGCCTGG
CCACTGACAT ACGGAATGTT TTTTTTCATC AGTCTCTCCG TTATAGCGCT AGGGTACAGC
TTTGCTGTTG ATGATTTCTC TGTGGCTTAT GTCGCCCATC ACTCTAATTC TCAACTACCA
ATATTCTTTA AAATTGCGGC GGTATGGGGT GGTCATGAAG GTTCATTATT ATTCTGGGTA
TTCGCGTTGT CTGTATGGAC TGCATCAGTG GCACTGTTTA GTAAGGGCTT AGAAGAAGTC
TTTACTGCAA GGGTGTTATC TGTTTTAGCG ATGATCGTTG TTGGCTTCGG TTTATTCATG
ATCCTAACTT CTAGTCCATT TGAACGGATA TTCCCTATTC CTCTAGAAGG GCGAGATTTA
AACCCAATGT TGCAAGATGT TGGCTTAATC TTCCATCCGC CAATGTTGTA TCTAGGGTAT
GTGGGTTTCT CGGTATGTTT TGCTTTTGCT ATTGCAGCCC TTATGAGTGG CAGACTTGAT
TCTGCTTGGG CACGCTGGAG TCGTCCTTGG ACTTTAGCTG CATGGATATT TCTAACTGGT
GGTATTTCAC TTGGTTCTTG GTGGGCTTAC TACGAATTAG GTTGGGGCGG CTGGTGGTTC
TGGGACCCAG TTGAAAATGC ATCATTTATG CCTTGGTTAG TCGGTACTGC TTTAGTGCAC
TCATTAATTG TGACGGAAAA GCGTGGGGCA TTCCGTAACT GGACTGTATT GCTGTCTATC
TTTGCCTTCT CATTAAGTTT ACTCGGCACC TTTATTGTAC GTTCGGGCGT TCTTACTTCA
GTGCATTCTT TTGCAGCAGA TCCAAGTCGT GGCTTGTTTA TCTTGTTGTT GTTAGGTATT
GCCATTGGTG GTTCATTAAC TTTGTTTGCC TTCCGAGCAA GCGAAATGAG TAGCCCTGCA
CGATTTGAGC TTAAATCGAA AGAAACCATG TTACTAATCT GTAATGTGTT ACTCACTGTT
GCGGCAGGTA CCGTTTTGCT GGGTACGCTT TATCCGTTAC TGATCGATGC ATTAGGCATG
GGTAAAATTT CTGTTGGCCC TCCATATTTT AATGCCGTAT TTGTCCCTAT CGTGTTAGTG
CTATTTGGCT TTATGGGTAT TGGTCCAATT ATTCGCTGGA AGAAATCTAA ACCGGGTGAA
ATTAAAAAGC AGTTACTTGT GCCTGCTATT ATCGCGTTAG TGGTTGGTGT GTCGGCTCCA
TTTGTTGCTG ATGGTCAATT TAATGCTTGG GTGATGTGTG GTGTAGCGGC TACAACGTGG
ATCATGCTAT CAACTTTGCG GGCTGCTTAT AATATTGTAA GCAACAAAGA AGGTGGTATC
AGTCTTAATA AAATGGGCCG TAGCCAATTA GGTATGATCG TCGCTCATTT TGGTATTGCT
GTGTCGGTAA TGGGCGCAAC TATCGTGTCT AATTACTCGA TTGAAAAAAG CGTGCGTATG
GGACCAGGAA TTAGCCAAGA ACTGGCTGGT TATACATTTA AGTATTTAGA AACTAAAAAT
GTAGTAGGTC CAAACTATAC CGCTCAACAA GGTCAAATCG AAATCTACAA AGATGATGAA
TTTATTACCT TGTTAAAGCC TGATCGTCGT CAATATAATG TTCGAACTAT GGATATGACC
GAAGCGGGTA TTGATTGGGG ATTGTTCCGC GATTTATATG TCACTATGGG CGATCCAATT
AGTTTAACTG AGTTTGCTGT GCGTCTTAAT TACAAGCCAT TTGTTCGTTG GTTATGGTTT
GGCTCGATCT TCATGATGAT AGGTGGGTTC CTTGCAGCAT CAGATAAGCG TTATCGTGTG
AAGCAGGTTG CAACAGAAGA TGCAGCAAAA GCAAAATTAG CGACAGCTTA A
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| Protein sequence | MIPELGHFSL ILGLAFALLL ASVPLYGSAR KDQYLVRYAW PLTYGMFFFI SLSVIALGYS
FAVDDFSVAY VAHHSNSQLP IFFKIAAVWG GHEGSLLFWV FALSVWTASV ALFSKGLEEV
FTARVLSVLA MIVVGFGLFM ILTSSPFERI FPIPLEGRDL NPMLQDVGLI FHPPMLYLGY
VGFSVCFAFA IAALMSGRLD SAWARWSRPW TLAAWIFLTG GISLGSWWAY YELGWGGWWF
WDPVENASFM PWLVGTALVH SLIVTEKRGA FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS
VHSFAADPSR GLFILLLLGI AIGGSLTLFA FRASEMSSPA RFELKSKETM LLICNVLLTV
AAGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIVLV LFGFMGIGPI IRWKKSKPGE
IKKQLLVPAI IALVVGVSAP FVADGQFNAW VMCGVAATTW IMLSTLRAAY NIVSNKEGGI
SLNKMGRSQL GMIVAHFGIA VSVMGATIVS NYSIEKSVRM GPGISQELAG YTFKYLETKN
VVGPNYTAQQ GQIEIYKDDE FITLLKPDRR QYNVRTMDMT EAGIDWGLFR DLYVTMGDPI
SLTEFAVRLN YKPFVRWLWF GSIFMMIGGF LAASDKRYRV KQVATEDAAK AKLATA
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