Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0181 |
Symbol | |
ID | 4277583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 188731 |
End bp | 189984 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638132931 |
Product | TPR repeat-containing protein |
Protein accession | YP_748882 |
Protein GI | 114561369 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.113058 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCACAT TTTGGATATT TATTGCGCTT GTCGTACTCA TCGGCCTAAT CATGATTTGG GTTCCACATT TTCGCCAACA AAAGCTGTTA CAAGCTGAAG AATCAGGTGT TCGTAGACAA ACTAACCTTG AACTTTTTGC TGAACGCATC TCCATTCTTG AAAAGGAATT GCAAGACCAA TTATTAGATC AGGTCGAATT CGAGGCATTA AAGAAAGAAT TAGAGATAAA TCTACTTCAG GACATGAGCC AGAAGGGTGA TGACTCCCTT GATGTAGAAA TTAAATCAAA AACCGCATTA TGGCCTGCTT TTATGACCCT GTGTCTATTA GCAGTATCTG GTTACTTATA TCAACACCTC GGTGCTTACA ACGAATTAGC TAACCCACCA CAAGCAAGCA ATCCTCATCA AGGTATGGAT CCTGCGCAAA TTATGTCGCA ACGGGTGCAG ATGATGGAAG CGAAGGTGCA GGCACAGCCA GACGATAGCC AAGCTTGGTT TAGCCTTGGC CATGCTTATA TATCTGCCAA TCAATATGAT AAAGCCATTG GCGCATTTGA TAAGGTAATG GAACTTGTCG GCACGCAAGC AGAACTCCTT GGGCCTAAAG CAACCGCGCT ATACTATAAA GCGAATCAGC AGATGTCGCC GGCGATTCAA GCTGTGATTG ATCAATCTTT AGCCTTAGAC CCACAAGACC CTTCTACACT ACTTCTTGTT GGTATGGATG CATTCTTTAC CGCTGATTAC AAAAAAGCTA TCAATGCTTG GCAGATGATC TTAGACAGCG ATCGTGATGA TGTTGATAGA ACAGCATTAA TGAATGCAAT TGAATCTGCA AACATGCGCC TTAATGAAGG CTCGGCAATG CCTAATGGTG AGTCAACTCA AAAGCCAGCT GTTACGAGCA ATGCTAATAC AGTCGCAATT GAAATTTCTA TTGCTCCAGA ATTAGCAGAC AAAGTAGCTG ATACCGATAC TGTGTTTATT TTCGCACGAG CAACTCAAGG CCCAAAAGTA CCGCTAGCAG CAACTAAAAT CAGTGCTAGC AGCTTACCTG TCACTGTCAC ACTAGATGAC AGTACTTCTA TGGGTGGTGA TGTAAAACTG AGTTCTGTCG GAGAAGTAGA AATCATTGCA GTACTGTCAA AAAATGGCAG CGTGAAACCA CAGTCTGGTG ACCTAAAGGG TAACATTAAA GCCGTTAAGG TGGGTGGCAA TGCTACACTA ACTCTGGATA CCTTAGTGCA ATAG
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Protein sequence | MTTFWIFIAL VVLIGLIMIW VPHFRQQKLL QAEESGVRRQ TNLELFAERI SILEKELQDQ LLDQVEFEAL KKELEINLLQ DMSQKGDDSL DVEIKSKTAL WPAFMTLCLL AVSGYLYQHL GAYNELANPP QASNPHQGMD PAQIMSQRVQ MMEAKVQAQP DDSQAWFSLG HAYISANQYD KAIGAFDKVM ELVGTQAELL GPKATALYYK ANQQMSPAIQ AVIDQSLALD PQDPSTLLLV GMDAFFTADY KKAINAWQMI LDSDRDDVDR TALMNAIESA NMRLNEGSAM PNGESTQKPA VTSNANTVAI EISIAPELAD KVADTDTVFI FARATQGPKV PLAATKISAS SLPVTVTLDD STSMGGDVKL SSVGEVEIIA VLSKNGSVKP QSGDLKGNIK AVKVGGNATL TLDTLVQ
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