| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0176 |
|---|
| Symbol | |
|---|
| ID | 4277578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 185713 |
|---|
| End bp | 185925 |
|---|
| Gene Length | 213 bp |
|---|
| Protein Length | 70 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638132926 |
|---|
| Product | Heme exporter protein D (CcmD) |
|---|
| Protein accession | YP_748877 |
|---|
| Protein GI | 114561364 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3114] Heme exporter protein D |
|---|
| TIGRFAM ID | [TIGR03141] heme exporter protein CcmD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.659924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTTG ATTCATTCAA AGACTTTCTT GATATGGGCG GTTACGCATT TTACGTTTGG
CTATCCTATG GTGTAACGTT CGGCTGTCTG GCAACATTGA TAACCCTAAG CATTAGACAA
AAACGTAAAG TTCTGATCGA AATTGCTAAA AAGATAACGC GTGAACAACG CCTGAAAGAA
ACAAGAGGTA ATAACCGTGA ATCCAAGACG TAA
|
|---|
| Protein sequence | MQFDSFKDFL DMGGYAFYVW LSYGVTFGCL ATLITLSIRQ KRKVLIEIAK KITREQRLKE
TRGNNRESKT
|
|---|
| |