| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0172 |
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| Symbol | rpsD |
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| ID | 4277242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 182108 |
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| End bp | 182728 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638132922 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_748873 |
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| Protein GI | 114561360 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000000508668 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCA GAGAAGGTAC AGACCTTTTC
CTAAAAAGCG GTGTGAGAGC AATCGATTCG AAGTGTAAGC TAGAAACTGC ACCTGGACAA
CATGGCGCTC GTAAGCCACG TTTGTCTGAG TATGGTATTC AGTTACGCGA GAAACAAAAA
GTTCGTCGTA TTTACGGTGT GCTAGAAAAG CAATTCCGTA ATTACTACAA AGAAGCTGCA
CGTCTAAAAG GCAATACTGG TGAAAACCTG TTGCAACTTT TAGAAGTCCG CCTAGATAAC
GTCGTTTATC GTATGGGTTT CGGTTCTACT CGTGCAGAAT CACGTCAGCT AGTAAGCCAT
AAATCTGTTA TGGTTAACGG TCGTGTTGTT AACATTCCGT CATTCAAAGT GTCTGCGAAT
GATGTTGTAA GCATCCGTGA AAAGTCACGT ACTCAAGCTC GTATTAAAGC GGCTTTAGAA
GTGGCTGGTC AACGCGAAAA GCCTACATGG GTAGAAGTCG ACAATGCGAA AATGGAAGGT
GCTTTCAAGC GCGTTCCAGA ACGTAGCGAT TTGTCTGCGG ATATTAACGA ACAGCTGATC
GTCGAGCTTT ACTCTAAGTA A
|
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| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKPRLSE YGIQLREKQK
VRRIYGVLEK QFRNYYKEAA RLKGNTGENL LQLLEVRLDN VVYRMGFGST RAESRQLVSH
KSVMVNGRVV NIPSFKVSAN DVVSIREKSR TQARIKAALE VAGQREKPTW VEVDNAKMEG
AFKRVPERSD LSADINEQLI VELYSK
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