Gene Sfri_0160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0160 
SymbolrplE 
ID4277230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp176385 
End bp176924 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content43% 
IMG OID638132910 
Product50S ribosomal protein L5 
Protein accessionYP_748861 
Protein GI114561348 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0094] Ribosomal protein L5 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000387746 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGAAAC TGCATGATAA ATATCAAGAG ACTGTAGTTG CTGAACTAGC TAAAAAGTTC 
GGCTACAGCA GTGTCATGCA AGTCCCTCGG ATTGAAAAAA TCACCCTAAA CATGGGTGTG
GGCGAAGCTG TTGCAGATAA GAAAGTTATG GAGCATGCGC TCCGTGACAT GACTGCAATC
GCTGGCCAGA AACCAATTGT AACTGTTGCT CGTAAATCAG TTGCTGGTTT TAAAATCCGT
GAAGGCTACC CTATTGGCTG TAAAGTGACC CTACGCGGTG AGCGTATGTG GGAATTTTTA
GAGCGTTTAG TTGACATTGC AATACCACGT ATTCGTGATT TCCGAGGCTT AAGCGCTAAA
GCGTTTGACG GCCGTGGTAA TTACGCAATG GGCGTGCGTG AGCAGATCAT CTTCCCAGAA
ATCGATTATG ATAAAATCGA TAAAATTCGT GGTATGGATA TTGTTATCAC TACTACTGCG
AAGAATGATG AAGAAGGTCG TGCTTTGTTA GACGCTTTTA ACTTCCCATT CAAGAAATAA
 
Protein sequence
MAKLHDKYQE TVVAELAKKF GYSSVMQVPR IEKITLNMGV GEAVADKKVM EHALRDMTAI 
AGQKPIVTVA RKSVAGFKIR EGYPIGCKVT LRGERMWEFL ERLVDIAIPR IRDFRGLSAK
AFDGRGNYAM GVREQIIFPE IDYDKIDKIR GMDIVITTTA KNDEEGRALL DAFNFPFKK