| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0142 |
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| Symbol | |
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| ID | 4277807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 161443 |
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| End bp | 165669 |
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| Gene Length | 4227 bp |
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| Protein Length | 1408 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638132892 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_748843 |
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| Protein GI | 114561330 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0021761 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTTAAACAG CAAAGTAAGA CTGAAGAATT TAACGGTATA
AAAATTGGTT TGGCCTCGCC AGATCTAATC CGTTCTTGGT CTTTTGGTGA AGTAAAGAAG
CCAGAAACCA TTAACTACCG TACATTCAAG CCTGAACGTG AAGGTTTGTT CTGTGCGCGT
ATCTTTGGTC CAGTTAAAGA TTACGAATGT TTGTGTGGTA AATACAAGCG TTTGAAGCAT
CGTGGTGTTA TTTGTGAAAA GTGTGGCGTA GAAGTTACCC AGACTAAAGT GCGTCGTGAA
CGCATGGGTC ACATTGATCT GGCTAGCCCA GTTGCCCACA TTTGGTTCTT AAAATCACTT
CCGTCACGTA TTGGCTTAAT GCTAGATATG ACGTTGCGTG ATATTGAACG CGTACTGTAT
TTCGAATCAT TTGTTGTGAT CGAGCCTGGC ATGACCACGC TTGAGCGCGG CCAAATGCTA
ACCGAAGAAA CGTATCTTGA TGCGTTAGAA GAATACGGTG ACGAGTTTGA AGCTAAAATG
GGTGCTGAAG CAGTTCTTGA ATTGCTACGA GCTATCAACT TAGCTGAACA GATCGAGCAA
ATGCGCGAAG AGTTGCCTTC AATTAACTCT GAAACCCGTC GCAAGAAGGT CACTAAGCGC
CTTAAGCTGA TGGAAGCATT CTTCACATCT GGCAACAAGC CAGAGTGGAT GATCTTAAAA
GTATTACCGG TTCTTCCACC TGATCTACGT CCATTAGTGC CGTTAGATGG TGGTCGTTTC
GCGACATCTG ATCTTAATGA TCTATACCGT CGTGTGATTA ACCGTAACAA CCGCTTAAAG
CGTCTGTTAG ATTTAGCTGC GCCTGACATT ATCGTACGTA ACGAAAAACG TATGTTACAA
GAGTCAGTTG ATGCGCTATT AGATAACGGT CGTCGCGGTC GTGCTATTAC GGGTTCTAAC
AAGCGTCCGC TTAAATCTCT TGCTGATATG ATCAAGGGTA AGCAAGGTCG TTTCCGTCAG
AACTTACTTG GTAAGCGTGT TGACTATTCA GGTCGTTCGG TAATTACCGT AGGTCCTACT
TTACGTCTGC ATCAGTGTGG TCTTCCTAAG AAGATGGCAC TTGAGCTATT CAAGCCATTT
ATTTACGGCA AGCTAGAAGC CCGTGGTTTA GCGACTACGA TTAAAGCTGC TAAGAAAATG
GTTGAACGCG AACAGGCTGA AGTATGGGAT GTGTTAGACG AAGTAATTCG TGAACATCCA
GTAATGCTTA ACCGTGCACC AACACTTCAC AGACTAGGTA TTCAAGCATT TGAACCTGTT
CTGATTGAAG GTAAAGCAAT TCAATTGCAT CCGTTAGTTT GTGCGGCATA CAACGCCGAC
TTCGACGGTG ACCAAATGGC GGTTCACGTT CCATTAACGC TTGAAGCTCA GTTAGAAGCT
CGTGCGCTAA TGATGTCAAC CAACAACATT TTGTCACCTG CTAACGGTGA GCCTGTAATT
ACTCCGTCTC AGGACGTTGT ATTAGGTTTG TACTACACCA GCCGTGAATG TATTAACGGT
CGCGGTGAAG GTATGGCGTT CGCTGATGTG TCAGAAGTAG AAAAAGCTTA CGCTACTGGT
GTTGCTGAAC TACATGCTCG CGTTAAAGTA CGGATTACCG AAACGAACAT CGCAGATGAT
GGCGAAAGAA CTAAATCAAC TCGTATCATT GATACCACAG TTGGTCGTGC TCTTTTATCA
TTAATTTTGC CTGAAGGCTT ATCGTATGAT TTGGTTAACC AAAACATGGG TAAGAAACAG
ATTTCTAAAC TGTTGAACAC TTGTTATCGT CAACTAGGTC TTAAAGATAC AGTTATCTTT
GCTGACCAAT TGATGTATAC CGGTTTCCGT TTTGCAACCA TTTCTGGTGC CTCTGTTGGT
ATCGATGACA TGGTTATTCC AGACGAGAAA TACACCTTAG TAGCTGACGC TGAAGCTGAA
GTGCTTGAAA TTCAAGAGCA GTTCCAATCA GGTCTTGTTA CTGCCGGTGA GCGTTACAAC
AAAGTCATCG ATATCTGGGC AAGTGCGAAC GAAAAAGTTT CAAAAGCGAT GATGGAAAAC
CTGTCAACTG AGACAGTGAT TAACCGTGAT GGCGTACCTG AGCAACAAGC TTCGTTTAAC
AGCATCTATA TGATGGCTGA CTCGGGCGCT CGTGGTAGTG CTGCACAGAT CCGTCAGTTA
GCGGGTATGC GTGGTTTGAT GGCTAAGCCA GATGGCTCAA TCATCGAAAC CCCAATTACG
GCTAACTTCC GTGAAGGTCT AAACGTACTT CAGTACTTTA TTTCTACTCA CGGTGCGCGT
AAAGGTCTTG CCGATACAGC ATTGAAGACA GCTAACTCGG GTTACTTGAC TCGTCGTTTA
GTAGACGTTG CACAAGACTT AGTCGTTATC GAAGATGACT GTGGTGTTGA GCATGGTCTT
ACAATGAAAC CGCTTATTGA AGGTGGTGAT GTTGTTGAGC CATTGCGTGA ACGTGTTCTA
GGTCGTGTAG TTGCTCTTGA CGTAATGAAG CCAGGTACTA ATGAAGTGCT TGCTCCACGC
AACACACTTC TTGATGAAGC ATGGTGTAAT ACGTTAGAAG AACACAGCAT TGATGAAGTG
ATTGTACGTT CTGTAATTAC CTGTGACACA GACTTCGGTG TGTGTGCAGC GTGTTATGGT
CGTGACTTGG CTCGTGGTCA TATTATTAAC CACGGTGAAG CTATTGGTGT TGTTGCAGCT
CAGTCAATTG GTGAACCTGG TACACAGTTA ACCATGCGTA CCTTCCACAT TGGTGGTGCG
GCATCTCGAG CTTCTGCAGA AAACAACGTT CAAGTTAAGA ATGCGGGTTC TCTGAAGTTA
CACAATGCTA AGCATGTTTC TAACATCGAC GGTAAGCTCG TTATCGTATC TCGTTCTTCT
GAGTTAGCTA TCATCGATGA GCTAGGTCGT GAGAAAGAGC GTTATAAAGT GCCTTACGGT
ACAGTATTAG AGAAATTGGA AGACAGTGAA GTTGCAGCTG GCGAAATCAT CGCTAACTGG
GATCCACATA CTCACCCAAT TATTTCTGAA GTTGCTGGTA GCGTGAAGTT CGTTGACATG
ATTGATGGTG TCACTATGAC ACGTCAAACA GATGAGTTAA CGGGCCTATC TTCTGTCGTT
GTGCTCGATG TTGGTGCGCG TACTTCAGCC GGTAAAGAAT TGCGTCCAGC AATTCGCTTA
GTTGATGCTG ATGGTAATGA CTTAATGATC CCTGGTACTG AAGTACCAGC TCAATACTTC
TTACCGGGTA ACGCGATTGT ATCGAAAGAT GATAACGCGA AAATCAACGT TGGTGATCCA
TTAGCACGTA TTCCACAAGA ATCGTCTAAA ACTCGCGACA TCACCGGTGG TCTTCCACGT
GTTGCTGACT TATTCGAAGC GCGTAAACCA AAAGAGCCTG CAATTCTTGC AGAAATCTCT
GGTACGATCT CGTTCGGTAA GGAAACGAAG GGTAAACGTC GTCTAGTGAT CACTCCAGCT
GATGGCAGTG AACATTATGA AGAAATGATC CCTAAGTGGC GTAACTTGAA CGTGTTCGAA
GGTGAAAAAG TCGAACGTGG TGAAGTTATT GCAGACGGTC CAGAAGCGGC TCATGACATC
TTGCGTCTTC GTGGTATCCA CAACGTAGCA AACTACATTG TGAACGAAGT ACAGGACGTT
TACCGTCTAC AGGGCGTTAA GATCAACGAT AAGCACATCG AAGTTATCAT TCGTCAAATG
TTACGTAAGT GTTTAATCAC TTCAACAGGC GACACTGAGT TCTTAGAAGG TGAGCAAGCA
GAAGTATCAC GCGTGAAGAT TGCTAACCGT GAGTTAATCG CTCAAGGTAA AACACCCGCA
ACGTTTGAAC GTGAATTACT CGGTATTACC AAAGCTTCTT TGGCAACTGA ATCATTCATC
TCTGCAGCAT CGTTCCAGGA GACCACTCGT GTGTTAACTG AAGCGGCCGT TGGCGGTAAG
AGCGATCCAT TACGTGGTTT GAAAGAAAAC GTAATCGTAG GTCGTTTGAT CCCAGCAGGT
ACAGGTTATG CTTATCACAA AACCCGTAAC GAAGAACGTG CTAAAATATT AAGCTCTCGT
GGCAAAGTGG AAACTACTAC AGTAACCGCA AGCGAAGCTG AAAAGAACCT AGCAGATCTA
CTAAATCTGG CTGGTAGCCA AGATTAA
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| Protein sequence | MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIDLASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTTLERGQML TEETYLDALE EYGDEFEAKM
GAEAVLELLR AINLAEQIEQ MREELPSINS ETRRKKVTKR LKLMEAFFTS GNKPEWMILK
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEARGL ATTIKAAKKM VEREQAEVWD VLDEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRECING RGEGMAFADV SEVEKAYATG
VAELHARVKV RITETNIADD GERTKSTRII DTTVGRALLS LILPEGLSYD LVNQNMGKKQ
ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR FATISGASVG IDDMVIPDEK YTLVADAEAE
VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN LSTETVINRD GVPEQQASFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGVEHGL TMKPLIEGGD VVEPLRERVL
GRVVALDVMK PGTNEVLAPR NTLLDEAWCN TLEEHSIDEV IVRSVITCDT DFGVCAACYG
RDLARGHIIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNAGSLKL
HNAKHVSNID GKLVIVSRSS ELAIIDELGR EKERYKVPYG TVLEKLEDSE VAAGEIIANW
DPHTHPIISE VAGSVKFVDM IDGVTMTRQT DELTGLSSVV VLDVGARTSA GKELRPAIRL
VDADGNDLMI PGTEVPAQYF LPGNAIVSKD DNAKINVGDP LARIPQESSK TRDITGGLPR
VADLFEARKP KEPAILAEIS GTISFGKETK GKRRLVITPA DGSEHYEEMI PKWRNLNVFE
GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM
LRKCLITSTG DTEFLEGEQA EVSRVKIANR ELIAQGKTPA TFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVGGK SDPLRGLKEN VIVGRLIPAG TGYAYHKTRN EERAKILSSR
GKVETTTVTA SEAEKNLADL LNLAGSQD
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