| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0141 |
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| Symbol | rpoB |
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| ID | 4277806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 157329 |
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| End bp | 161360 |
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| Gene Length | 4032 bp |
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| Protein Length | 1343 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638132891 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_748842 |
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| Protein GI | 114561329 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.683785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTTACT CCTATTCTGA AAAGAAGCGT ATTCGCAAAG ACTTTGGTAA GCGTCCAAAA
GTTTTGGACA TCCCTTATTT ATTGTCTATC CAGTTAGACT CTTTTAAGAA GTTCACCGAT
CATGACCCTA CGGGTGAGCG TGGCTTAGAA GCCGCATTCC GTAGCGTTTT TCCTATCAAG
AGCTTTTCTG GCTATTCTGA GCTGCAATAT GTCAGCTACA AGCTAGGTGA GCCAGTTTTT
GATGTGAAAG AATGTCAGAT CCGCGGTGTA ACTTATTCGG CACCACTACG CGTTAAATTA
CGCATGGTGT TGTTCGACCG TGAAGCTGCT GCTGGCACTG TTAAAGACAT TAAAGAGCAA
GAAGTCTACA TGGGTGATAT TCCTATGATG ACTAATAACG GTACTTTCGT TATTAACGGT
ACTGAGCGTG TAATCGTGTC TCAGTTACAC CGTTCTCCAG GTGTGTTCTT TGATCATGAC
CGTGGTAAAA CCCACTCTTC TGGTAAGGTG CTGTATAACG CACGTATTAT TCCTTACCGT
GGTTCATGGC TTGACTTTGA ATTTGATCCT AAAGATGCTC TATTCGTTCG TATTGACCGT
CGTCGCAAAT TACCAGCGAC TATTATCTTA CGTGCACTTG AATATTCTAC TCAAGATATC
CTCGATTTAT TCTTCGAGCG TATTGAGTTT AAGATTAAAA AAGATTCATT AGTCATGGCA
CTTGTGCCTG ACCGTCTACG TGGTGAAACT GCTGGCTATG ACATTAAAGA TGCTGAAGGC
GCTTTATTGG TTGAAGCTGG TCGTCGCATC ACTGCACGTC ATATTAAGCA ACTTGAAAAA
ACCAATACTA CTGAGCTAGA AGTGCCAGTA GATTATATTG TTGGTAAGTA TGCTGCTCAA
GACTACATCG ATGAAGATAC CGGTGAAGTT TTAGTGACTG CAAACAGCGA GATTACCTTA
GAAGATTTAG CTAAGTTATC ACTTGCTGGT ATTAAGAATA TTGATACTTT ATTTATCAAT
GATCTTGATC ACGGTGCTTA TATTGCTGAT ACATTGCGCA TTGATTCAAC AACTAACCGC
TTAGAAGCAC TAGTTGAAAT CTATCGTATG ATGCGTCCTG GCGAGCCACC AACCAAAGAT
GCAGCTGAAG GTTTATTCCA AAACCTATTC TTCAGTGAAG AGCGTTATGA CCTATCTAAA
GTAGGTCGTA TGAAGTTCAA CCGTCGTCTT GAGATTGCTG AAGACGAAGG TAACGGTGTG
TTGTCTAAAG AAGACATCGT ATCTGTTATG AAGAAAATCA TCGAAATCCG TAACGGTTAT
GATGAAGTCG ACGATATTGA CCACTTAGGT AACCGTCGTA TTCGTAGCGT TGGTGAAATG
GCTGAAAATC AGTTCCGTGT TGGTTTAGTC CGTGTTGAGC GTGCTGTTCG TGAACGTCTA
TCTTTAGGCG ATTTAAACGA GCTTATGCCA CAAGACTTAA TTAACGCTAA GCCAATTTCT
GCGGCAGTGA AAGAATTCTT TGGTTCTTCA CAGTTGTCAC AGTTTATGGA TCAAAACAAC
CCGCTATCAG AAGTAACGCA TAAGCGTCGT ATTTCTGCGC TTGGTCCAGG TGGTTTGACT
CGTGAGCGTG CTGGTTTCGA AGTTCGTGAC GTACATCCAA CTCACTACGG TCGTTTATGT
CCAATTGAGA CCCCAGAAGG TCCAAACATT GGTCTAATCA ACTCGTTAGC AAGTTTTGCA
CGTACTAACT CTTACGGCTT TTTAGAAACA CCTTACCGCA AAGTGGTTGA TGGTGTGATT
ACTGATGATG TTGAATACTT ATCAGCAATC GAAGAAGGTC GTTACGTTAT TGCTCAGGCT
AACATCGAAG TTGATGCTGA TGGCCGTATG GCAGAAGAAC AAATTGCTTG TCGCCACAAA
GGTGAATCTA CCTTTATGCG CGCAGCTGAT GTTCAGTATA TGGACGTATC TCCACAACAG
ATTATTTCTG TTGCAGCATC ATTAATTCCG TTCTTAGAAC ACGATGATGC TAACCGCGCA
TTGATGGGTG CAAACATGCA ACGTCAAGCA GTACCCACTT TACGTGCTGA TAAGCCGTTA
GTCGGAACGG GTATTGAACG TACTCTTGCT GTTGACTCTG GTGTGGTTGT AGCTGCTAAA
CGTGGCGGTG TGGTTGATTA TGTTGATGCT AGTCGTATCG TAGTTAAAGT AAATGAAGAT
GAGCTACACG CAGGTGAAGC CGGTATCGAC ATTTATAACC TAACTAAATA TACCCGTTCA
AACCAAAACA CTTGTATTAA CCAACGTCCT TGTTGTTCTG TTGGTGAGCC TGTGGTTCGT
GGTGACGTAT TGGCAGATGG TCCATCTACC GATTTAGGTG ATTTGGCTCT TGGTCAGAAC
ATGCGTATCG CGTTCATGCC TTGGAACGGT TATAACTTCG AAGATTCGAT CTTAATTTCT
GAGCGCGTAG CGCAAGAAGA CCGTTTCACT ACTATCCATA TCCAAGAGCT TTCTTGTATT
GCTCGTGATA CTAAATTGGG TAGCGAAGAA ATCACTGCTG ATATTCCAAA CGTAGGTGAG
TCTGCTTTAT CTAAACTAGA TGAATCAGGT ATCGTTTATA TTGGTGCAGA AGTGAAGGGT
GGCGACATTC TAGTGGGTAA AGTGACACCT AAAGGTGAAA CACAGTTAAC CCCTGAAGAG
AAACTACTCC GAGCTATTTT TGGTGAAAAA GCGTCTGATG TTAAGGACAG CTCATTACGT
GTTCCTAACT CAGTGAAAGG CACCATCATC GACGTACAGG TATTTACCCG TGACGGCGTT
GAGAAAGACA AGCGTGCGCT TGAAATTGAA GACATGCACG TTCGTCAAGC TCGTAAAGAC
TTAGGCGAAG AGTTCAAGAT CCTTGAAGAA GGCGTATTGG GCCGTGCACG TAACTTGTTA
CTGTCTGTGG GTTATTCTGA AGCTAAGTTA GCTGAGATCC CACGTAAAGA CGTATTGATT
CAAGTTATCG ACGACGAAAC TAAACAAACT GAATTAGAGC AGTTAGCTGA ACAGCACGAA
GAGCTAAAAG CTGACTTTGA TAAGACATTT GAAATTAAGC GTCGTAAGAT CACCCAAGGT
GATGACTTGG CTCCTGGTGT ATTGAAGATT GTTAAGGTTT ACCTTGCAGT TAAACGTACT
ATCCAGCCTG GTGACAAGAT GGCGGGTCGT CATGGTAACA AAGGTGTTAT CTCGAAGATT
TGTCCTGTTG AAGACATGCC ATACGACGAA GAAGGTAATC CTGTAGACAT CGTACTTAAC
CCATTGGGCG TACCATCGCG TATGAACATC GGTCAGGTAC TTGAAGTCCA CATGGGCGCA
GCAGCTAAAG GTATCGGTAA TAAGATTACT GCTATGCTTG AAGAGCAGCG TGAAATTGCC
GAACTTCGTG GTTACATCAA GCAAGTATAC GAATTAGGTG ATGACGTGCT TCAGCGCGTT
GATATCGATT CGTTTACTGA TGATGAAGTT GTGCGCTTGG CTACCAACCT TAAAGGTGGT
ATTCCAATTG CAACACCAGC ATTCGACGGT GCTAAAGAGA AAGAGATCAA GCAAATGCTT
GCTCTTGCAG GCTTACCTGA GTCTGGCCAG TTGACATTAT GTGACGGCCG TACCGGTAAC
GAATTTGAGC GTAAAGTAAC CGTTGGTTAC ATGTATATGC TTAAATTGAA CCACTTAGTT
GATGACAAGA TGCATGCTCG TTCTACGGGT TCATACAGCT TAGTGACTCA ACAACCATTG
GGCGGTAAAG CTCAATTCGG TGGTCAGCGT TTCGGTGAGA TGGAAGTGTG GGCACTTGAA
GCATATGGTG CTGCTTATAC TCTACAAGAA ATGCTAACAG TTAAGTCAGA TGACGTTAAC
GGTCGTACTC AGATGTATAA AAACATCGTC GACGGTAACC ATCAGATGCA ACCAGGCATG
CCTGAGTCTT TCAACGTATT GTTGAAGGAA ATTCGTTCAC TTGGTATTAA TATCGAGTTG
GACCAAGAGT AA
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| Protein sequence | MVYSYSEKKR IRKDFGKRPK VLDIPYLLSI QLDSFKKFTD HDPTGERGLE AAFRSVFPIK
SFSGYSELQY VSYKLGEPVF DVKECQIRGV TYSAPLRVKL RMVLFDREAA AGTVKDIKEQ
EVYMGDIPMM TNNGTFVING TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR
GSWLDFEFDP KDALFVRIDR RRKLPATIIL RALEYSTQDI LDLFFERIEF KIKKDSLVMA
LVPDRLRGET AGYDIKDAEG ALLVEAGRRI TARHIKQLEK TNTTELEVPV DYIVGKYAAQ
DYIDEDTGEV LVTANSEITL EDLAKLSLAG IKNIDTLFIN DLDHGAYIAD TLRIDSTTNR
LEALVEIYRM MRPGEPPTKD AAEGLFQNLF FSEERYDLSK VGRMKFNRRL EIAEDEGNGV
LSKEDIVSVM KKIIEIRNGY DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL
SLGDLNELMP QDLINAKPIS AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT
RERAGFEVRD VHPTHYGRLC PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVVDGVI
TDDVEYLSAI EEGRYVIAQA NIEVDADGRM AEEQIACRHK GESTFMRAAD VQYMDVSPQQ
IISVAASLIP FLEHDDANRA LMGANMQRQA VPTLRADKPL VGTGIERTLA VDSGVVVAAK
RGGVVDYVDA SRIVVKVNED ELHAGEAGID IYNLTKYTRS NQNTCINQRP CCSVGEPVVR
GDVLADGPST DLGDLALGQN MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI
ARDTKLGSEE ITADIPNVGE SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE
KLLRAIFGEK ASDVKDSSLR VPNSVKGTII DVQVFTRDGV EKDKRALEIE DMHVRQARKD
LGEEFKILEE GVLGRARNLL LSVGYSEAKL AEIPRKDVLI QVIDDETKQT ELEQLAEQHE
ELKADFDKTF EIKRRKITQG DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI
CPVEDMPYDE EGNPVDIVLN PLGVPSRMNI GQVLEVHMGA AAKGIGNKIT AMLEEQREIA
ELRGYIKQVY ELGDDVLQRV DIDSFTDDEV VRLATNLKGG IPIATPAFDG AKEKEIKQML
ALAGLPESGQ LTLCDGRTGN EFERKVTVGY MYMLKLNHLV DDKMHARSTG SYSLVTQQPL
GGKAQFGGQR FGEMEVWALE AYGAAYTLQE MLTVKSDDVN GRTQMYKNIV DGNHQMQPGM
PESFNVLLKE IRSLGINIEL DQE
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