Gene Sfri_0129 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0129 
Symbol 
ID4277111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp147337 
End bp147870 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content46% 
IMG OID638132875 
ProductISSod10, transposase OrfB 
Protein accessionYP_748830 
Protein GI114561317 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.207172 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCGTTAG ATCGCATTGA TGTTTGGTTT CAAGATGAAG CTAGATTTGG TCAGCAAAAT 
ACCACGACCC GCATTTGGGC AACGAAAGGA ACCCGACCAC GAGCGGTAAG GCAACAACAG 
TTCGAATCAG CATATTTATA TGGTGCGGTG TGTCCTGCAA CGGGCACGAC AGAGGCTATG 
ATTGCCCCGC ATGCCAACAG TGAATATATG TGGGAGCATT TAACATTAAT TTCAGAGGCA 
ACCGAATCGG GTCGCCATGC TTTGGTCATC ATGGATGGTG CAGGTTGGCA TCAACAAGAT 
CTGACTGAGG ACTTTGATAA CCTTAGTATC CTTAAGCTTC CGCCCTATTC GCCAGAACTC 
AACCCTATAG AACAAGTGTG GCAATGGCTT CGTCAGAATG AACTCGCAAA TCGTTGCTTT 
AGTGGATATG ACGATATTGT TGAGCAGTGT TCCATTGCAT GGAATCGATT TATTGCAGAG 
CCGGAAAGGG TGATTCAACT ATGTTCTAGA CGGTGGACAA AATTGACCAA TTAA
 
Protein sequence
MALDRIDVWF QDEARFGQQN TTTRIWATKG TRPRAVRQQQ FESAYLYGAV CPATGTTEAM 
IAPHANSEYM WEHLTLISEA TESGRHALVI MDGAGWHQQD LTEDFDNLSI LKLPPYSPEL 
NPIEQVWQWL RQNELANRCF SGYDDIVEQC SIAWNRFIAE PERVIQLCSR RWTKLTN