Gene Sfri_0121 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0121 
Symbol 
ID4277191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp134018 
End bp134632 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content41% 
IMG OID638132862 
Productputative transcriptional regulator, TetR family protein 
Protein accessionYP_748822 
Protein GI114561309 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.778342 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCGAGAC GAAAAGAGCA TACGCATGAG CAGATCCGCC ATATGGCTAT TAGTGCAGTG 
GTTGAGCATT TACAATGTCA TGGCGTCGAT AACCTAAGTT TACGAAAAGT TGCGACAACC 
ATTGGTTACG TGCCAAGTAC GTTAATTAAT ATTTTTGGTA GTTACCAATA CTTATTACTC 
GCGGTATCTG AGCAAACATT GTTACAGCTT GCTGCGCAGT TACAGTTAAT TAAACCGACC 
ACGCCAACCA AAACCATTGA GCAAATGGCA ATCGTTTATA GTCAGTTTGC TTTAGCGAAT 
CGACGCTGTT TCCGATTGGT ATTTGAATTA ACAATGACAG ATGACCAACC TTTACCTGCA 
GCTCACCTCG GGTTGATTAA GTCATTATTT TCTGATGTTG AGTTCCAACT AAGTCAATAC 
TTTCCTTCTG CATGTGAGCA AGAGGTGGAA ATGATGAGCC GCGTACTTTG GGGGGGAATA 
CACGGGTTAA CGTGTTTGTC ATTGGATGGA AAACTATTTG AGACACAATC CTGTTTACAA 
GACATGTTGA CGAGTCATGT AAGTAGTTAT ATTGATGGAA TGAGCATAAA AAGGAATTCA 
AATGCTGCTA ACTAA
 
Protein sequence
MARRKEHTHE QIRHMAISAV VEHLQCHGVD NLSLRKVATT IGYVPSTLIN IFGSYQYLLL 
AVSEQTLLQL AAQLQLIKPT TPTKTIEQMA IVYSQFALAN RRCFRLVFEL TMTDDQPLPA 
AHLGLIKSLF SDVEFQLSQY FPSACEQEVE MMSRVLWGGI HGLTCLSLDG KLFETQSCLQ 
DMLTSHVSSY IDGMSIKRNS NAAN