Gene Sfri_0119 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0119 
Symbol 
ID4277189 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp131666 
End bp132766 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content40% 
IMG OID638132860 
ProducttRNA 2-selenouridine synthase 
Protein accessionYP_748820 
Protein GI114561307 
COG category[R] General function prediction only 
COG ID[COG2603] Predicted ATPase 
TIGRFAM ID[TIGR03167] tRNA 2-selenouridine synthase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGAGG TTATTCCCAG CTCAGAATAT GGCAGACTTC TATTAGAAAA CCGTCCATTA 
ATAGACGTAA GAGCGCCTAT CGAATTTACT AAAGGCGCTT TTGGCCACTC GATTAATTTA 
CCGTTAATGC AAGATGGTGA ACGCGAAAAA GTGGGTACAT GCTATAAAAA ACGTGGCCAA 
GAAGCTGCTA TAGCATTAGG TCATGAGCTG GTGAAAGGTA AAGTTAAACA ACAACGTATA 
GATGCTTGGC TTGCTCAGCT CTCACAACAT CCTGACAGTT ATTTATATTG TTTTCGTGGC 
GGTTTGCGCT CAAAGCTATC ACAGCAATGG ATTAAAGAAT CAGGCATGGA CATCCCTTAT 
ATTGAAGGGG GTTACAAAGC CATACGTAGT TTTTTAATTA ATACTATCGA GCAAGCGCCA 
AGCCAATCTA AAGTGCTGAT TTTAAGTGGT ATAACAGGTA GTGGTAAAAC GGAAGTTATC 
CATCAGCGAG ATGAGTCTGT CGACCTTGAA GGCCTTGCCA ACCATAAAGG GTCTAGCTTT 
GGCAAAAATA TCGATCCGCA ACCCAGTCAA ATTAACTTCG AAAATAATTT AGCCGTGGCA 
TTGCTGAAGC ATCAACAACA GCAACATAAC CATTTGCTAT TAGAAGATGA AAGTATGCTA 
ATTGGTCGTT CAGCCCTGCC GAAGCATTTT TACAGCGCGA TGCAGCAAGC TGATATTATC 
GTACTCGACG AACCATTAGA CGCACGTTTG CCGCGTTTAT TAAATGACTA TGTTGAACAA 
AAACTGACTG ATTATGTATC TGGATTAGGT GAGCAAGCGG GTTTCGATGC ATTTAAAGCT 
TATTTGGCTC AAAGCTTATT GGGCATTCGT AAACGCTTAG GCGGTAAGCA ACATCAAGAA 
TTGCAGGACT TGGTTGATAA TGCGCTAAAC GTACAACAAA GCCAAAATGA TACCAGTAAG 
CATTTAGACT GGATAAATCT GTTACTCGAT ATTTATTATG ACCCGATGTA TCTATATCAA 
CTTGAAAAGA AACAGGACAG AGTTATCTTT CAAGGCGACA GACAAGCTAT ACATCAATGG 
TTAGATAAAC ATAAGTCATA A
 
Protein sequence
MSEVIPSSEY GRLLLENRPL IDVRAPIEFT KGAFGHSINL PLMQDGEREK VGTCYKKRGQ 
EAAIALGHEL VKGKVKQQRI DAWLAQLSQH PDSYLYCFRG GLRSKLSQQW IKESGMDIPY 
IEGGYKAIRS FLINTIEQAP SQSKVLILSG ITGSGKTEVI HQRDESVDLE GLANHKGSSF 
GKNIDPQPSQ INFENNLAVA LLKHQQQQHN HLLLEDESML IGRSALPKHF YSAMQQADII 
VLDEPLDARL PRLLNDYVEQ KLTDYVSGLG EQAGFDAFKA YLAQSLLGIR KRLGGKQHQE 
LQDLVDNALN VQQSQNDTSK HLDWINLLLD IYYDPMYLYQ LEKKQDRVIF QGDRQAIHQW 
LDKHKS