Gene Sfri_0115 details

Gene Information

• Locus tag: Sfri_0115
• ID: 4277185
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 128239
• End bp: 129000
• Gene Length: 762 bp
• Protein Length: 253 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638132856
• Product: type II secretion system protein N
• Protein accession: YP_748816
• Protein GI: 114561303

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCTTAT TTTCAAAAAT AGTCATTGGC GTCATTATTT ACCTCGCGTT TTTATTGGTT 
TATTTACCTG CGAACTGGTT AGTCAGTATC GCTCCGTTAC CTAATAATGT GGTTATCACA 
GGTGCCGAAG GTACGCTTTG GCAAGGAAAG GCGGCGTTAA TCACCATTGA ACAACGTCAA 
ATAGAACACG TTAGTTGGCA GTTAAGTCCT TGGGGATTAC TGCTTGGTAA AGCCGATATT 
GATTTTAATA TTGGTAATCG AGCTACGGCT GTAAGTGGTA AAGGTAGTGT GAGTTGGTCG 
TTATCTGGGT TGAGTGCGAA AAATATTCGA CTTGATCTAC CCGATAGTTT TTTATTAGCG 
GGAGCCCGTT TACCTTTTAA AACCCAAATT GATGGCGATG TGAGTTTAAT GGTTGCAGTG 
CTAGAGCAAG GTAAACCATG GTGCGAACAA TTAAACGGTA AATTATTTTT AAATAACACC 
AATGTTAAAA ATCAATATGG TGCGTACCCT TTAGGTAACA TTGCATTGGG GCTCAGTTGT 
CTTGATGGTC AATTACAAAT TGCCACTGAT GAAACCCAAA ACGTATTAGG CTTAACGGGA 
ACCGCTATTC TAGGCGAGTC AAACTTGGTT AAAGTAAGTG CTAAAATTAA ACCGACCGAT 
GCCCAACCTA AAGATTTACG CGATTCGTTA TCCTTTTTAG GCCGACAAGA CAGCCAAGGT 
TATTACCCTA TCAACTATCA AGGCGTTGTG CCTGGCTTGT AA 

 

Protein sequence

MSLFSKIVIG VIIYLAFLLV YLPANWLVSI APLPNNVVIT GAEGTLWQGK AALITIEQRQ 
IEHVSWQLSP WGLLLGKADI DFNIGNRATA VSGKGSVSWS LSGLSAKNIR LDLPDSFLLA 
GARLPFKTQI DGDVSLMVAV LEQGKPWCEQ LNGKLFLNNT NVKNQYGAYP LGNIALGLSC 
LDGQLQIATD ETQNVLGLTG TAILGESNLV KVSAKIKPTD AQPKDLRDSL SFLGRQDSQG 
YYPINYQGVV PGL