| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0111 |
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| Symbol | |
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| ID | 4277181 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 124798 |
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| End bp | 125508 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638132852 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_748812 |
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| Protein GI | 114561299 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCATAA CAAAGCCTAG GCATTTTAGC GGCTTTACCT TACTCGAAAT GCTTATCGCG
ATTGCGATTT TTGCCATGCT GGGTATCGCG GCAAACTCAG TATTGTCGAC GGTAATGAAA
AATGATGAAG TGACCAAAGA GTTTGCTACT CGGCTTAAGT CATTACAGCA AGGTTTTGGT
GCGTTAGAGC GTGATTTGGG CCAAATGGTG GCGCGTAGCC CTAGATTATT TGAAGGTGAT
CGTGGCAGCC GTTTTTTTCA GGCTGGCGAT AATATTCTCG ACTCAGAAAC CGAAGCACTG
GTATTTTACC GTTTGGGCTG GTTAAACCCC GATGGCATGT TACCTAGAGG AAGTCTGCAA
TCGGTTGCTT ATGTGGTTCA AAATGGCCGC CTTGAGCGTT GGTATTATCC TTATCCTGAA
CCTGTATCAG GTGCTGAGCC ATTAAAAAGC GTGGTTATTG ACCATGTGCT GTCAATTGAG
TATTCGTTTT ATATGGATGA TAAATGGCAG AAGCAAGTTG ATGGAACCGT GATGCCAAAA
GGGATTGCGA TGGAAATAGA ATTAGAAGGT TTGGGTAAAA TTCAGCGTCG TTTTTTACTG
CCTAAAGGTG CACCAGCAAC TAAGTCTGAC AACGATAGTG GTAACAATCG TAACGGTTCA
AATAGTAAAG ATGAAAATGA TATCGCAGCC AATGATGGGA AATCCTCATA A
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| Protein sequence | MSITKPRHFS GFTLLEMLIA IAIFAMLGIA ANSVLSTVMK NDEVTKEFAT RLKSLQQGFG
ALERDLGQMV ARSPRLFEGD RGSRFFQAGD NILDSETEAL VFYRLGWLNP DGMLPRGSLQ
SVAYVVQNGR LERWYYPYPE PVSGAEPLKS VVIDHVLSIE YSFYMDDKWQ KQVDGTVMPK
GIAMEIELEG LGKIQRRFLL PKGAPATKSD NDSGNNRNGS NSKDENDIAA NDGKSS
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