Gene Sfri_0110 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0110 
Symbol 
ID4277180 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp124380 
End bp124817 
Gene Length438 bp 
Protein Length145 aa 
Translation table11 
GC content43% 
IMG OID638132851 
Productgeneral secretion pathway protein I 
Protein accessionYP_748811 
Protein GI114561298 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2165] Type II secretory pathway, pseudopilin PulG 
TIGRFAM ID[TIGR01707] general secretion pathway protein I
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAC TCACATCATA TCGACGCCCT CAATACTGGA AAGTTAACAG CTCAGATATT 
AAAAGCTTAC GCGGTAAGAA TCGTGGTATG ACTTTACTTG AAGTTATCGT TGCTTTAGCG 
GTGTTTTCCA TTGCAGCGGT ATCGGTTACC AAAAGTTTGG GCGAACAAAT GGCGAACATG 
CCCATTTTAG AAGAACGAAC GTTAGCGCAA TGGGTAGCCA GTAATCAAAT GGTCGACGTG 
CGTTTACCTG GTACCTTTCC TGATATAGGC CAAAAAACGG GTCAGTCAGA GCTCGCAGGT 
CGTGAATGGT ATTGGCGCCA AGAAGTGATT AAAACCACCG ATGATAAATT TAGAATGATC 
CGTATTAGCG TCAGTGACGA CGACAAATTT AAACGCGTAG TGGCTCAGGT AAGCAGTTAT 
GTCCATAACA AAGCCTAG
 
Protein sequence
MNKLTSYRRP QYWKVNSSDI KSLRGKNRGM TLLEVIVALA VFSIAAVSVT KSLGEQMANM 
PILEERTLAQ WVASNQMVDV RLPGTFPDIG QKTGQSELAG REWYWRQEVI KTTDDKFRMI 
RISVSDDDKF KRVVAQVSSY VHNKA