| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0109 |
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| Symbol | |
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| ID | 4277179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 123815 |
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| End bp | 124387 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638132850 |
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| Product | general secretion pathway protein H |
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| Protein accession | YP_748810 |
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| Protein GI | 114561297 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCATC ATCGTCAAGC CGGTTTCACT TTATTAGAGG TGTTAATTGT GGCATTGCTA
ATGGGTTTGG TTGCCTCTGC GGTAACCATG TCTATTAGTG TTGCTGGGCC GGAACAAATG
CTCAAAAAAC AGGCGCAACG TTTTATGACT GCAACTGAGA TGGTACTTGA TGAAAGTGTC
TTAAGCGGTC AGTTTATTGG CATTGTGATT GACGAAGATC AATATCAGTT TGTGTTTTAT
AAAGAAGGTA AATGGATGCC TGTTGATCAA GACCGGCTAT TATCGGCCAA AAAAATGGAT
ACCGGTATTA CCTTAGATAT TGTGATCGAT GGCATGCCAT TAGTTCAAGA AGACGAGCAA
AATGAGTCTT GGTTTGATGA GCCTTTTATC GACGAAGAGA GCGAAGAAGA TAAAAAGAAA
CATCCTGAAC CGCAAATTTT ATTGTTTCCC AGCGGAGAGA TGACTCCCTT TGAACTGGGT
TTTAATACGA TCAATGATGA CCGTCAGCCA GTCAATGTGC TGGTTGTGGG TGATGCGTTA
GGTCGCTTAA CATTAGGGCG TGTAGATGAA TAA
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| Protein sequence | MIHHRQAGFT LLEVLIVALL MGLVASAVTM SISVAGPEQM LKKQAQRFMT ATEMVLDESV
LSGQFIGIVI DEDQYQFVFY KEGKWMPVDQ DRLLSAKKMD TGITLDIVID GMPLVQEDEQ
NESWFDEPFI DEESEEDKKK HPEPQILLFP SGEMTPFELG FNTINDDRQP VNVLVVGDAL
GRLTLGRVDE
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