Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0105 |
Symbol | |
ID | 4278277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 118362 |
End bp | 120494 |
Gene Length | 2133 bp |
Protein Length | 710 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638132846 |
Product | general secretion pathway protein D |
Protein accession | YP_748806 |
Protein GI | 114561293 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAATA AAGGGATCCG ACATAACATT ATTGCTGGAA TGCTTATGGG CGCTGCAATG ATAGCGGCAC CGAGTGCTTG GTCGGAACAA TATGCCGCCA ATTTTAAAGG CACTGACATT CAAGAATTTA TTAATATTGT CGGTAAAAAC CTCAATAAAA CCATTATTGT AGATCCAACA GTACGTGGCA AAATTAATGT CCGTAGTTAC GATTTACTTA ATGATGATCA ATATTACCAA TTCTTCCTTA ACGTACTTCA AGTGTATGGT TATGCAGTGG TTGAAATGGA AAACCACGTC ATTAAAGTCA TTAAAGACAA AGACGCCAAA ATGGCTTCTA TTCGTGTCGC CGATGACAAG TCGCCTGGTG TTGGTGATGA AATGGTCACC CGAATTGTTC CTTTATACAA TTCTGAAGCT AAACAACTTG CTCCCTTACT TCGCCAGTTG AATGATAATG CTGGTGGCGG TAACGTTGTT AACTATGATC AATCAAACGT GTTAATGATT TCTGGTCGTG CAGCGGTAGT GAACAAGTTG GTAGAGATTG TTCGCCGAGT TGATAAGCAA GGCGACACCG ACGTACAAGT CGTGGCTTTA GATTACGCCT CTGCAGGGGA AATTGTTCGC ATAGTCGATA CCTTATATCG CTCAAGTGCT AACCAATCAC AGCTGCCAGG CCAAGCGCCT AAAGTGGTGG CTGATGAGCG CATGAATGCG GTTATTGTCA GTGGCGATGA AAAAAGTCGT CAACGTGTAA TCGAACTCAT TAAACGCCTC GATGCTGAAC AGGCTAGTAC GGGTAACACC AAGGTACGTT ATTTACGTTA CGCCAAAGCA GAAGACTTAG TTGAAGTATT AACTGGGTTT GCACAAAACT TACAAGATAA TAAAGAGGGT GCCAGTACTC AGCAAGGCAA CTCAAGTAAG CGTCGTAGTG ATATCAATAT TATGGCCCAC AGCGACACTA ACTCACTGGT GATTAGTGCT GAACCAGATC AACTGCGTAC CATTGAAAGC GTCATTAATC AGCTTGATAT TCGCCGTGCT CAAGTGCTCG TTGAAGCCAT TATTGTTGAA ATCGCTGAAG GCGATAATGT TGGTTTTGGA GTGCAATGGG GCAGCGAAGC GGGTGGCTTA ACGCAGTTTA ACAACATTGG CCCAACCATT GGTGAAGTCG GTGCCGGTGT GTGGTCTGCA CGCGAAACTG ATGGCACTAC AGTAACAGTA GGCAATTCAG ATGGCGGCTC TACTACCACC ACCAATCCAA CCTCTGATGG GGATTACACT TTAATCGCGC AAGCATTGGG TAAAGTGAAT GGTATGGCGT GGGGCGTGAC CACAGGTAAC TTTGCGGCGT TAATCCAAGC TGTGTCGAGT GATACAAATT CAAACGTACT AGCAACACCG TCTATTACCA CACTAGATAA CCAAGAAGCC TCGTTTATTG TCGGTGATGA AGTGCCGATT ATTACCGGTT CAACCTCAAG TTCTAACAAT GATAATCCAT TCCAAACGGT AGAACGTAAG GAAGTCGGAG TTAAGCTCAA AGTGGTACCG CAAATCAACG AAGGTTCATC GGTTAAATTA ACTATTGAAC AAGAAGTGTC GGGTGTTAAT GGTAACACTG GTGTCGACAT CAGTTTCTCT ACTCGTCGTT TAACGACCAC GGTTATGGCA GATTCAGGCC AAATTGTGGT GCTGGGTGGA TTAATTAACG AAGAAGTACA AGAAAGTATT CAAAAAGTCC CAATTCTTGG CGATATTCCT TTTATAGGTC ATTTATTCAA GTCTTCTTCT AGTAAGAAAA CGAAAAAGAA TTTAATGATT TTTATTAAGC CCACCATTAT CCGTGACGGT ATGACAATGG AAGGGATTGC TGGTCGTAAA TATAATTATT TCAGAGCATT ACAACTGGAA CAACAAGCTC GTGGTATTAA TTTAATGCCA AATACTCAAG TCCCAGTTCT TGAAGAATGG GATCAAGAGG CCTACTTGCC AGATGAAGTG AATGACATGC TTGATCGCTA TAAAAGCGGC AAAGGGCTGA GCACCGATAT ACGTGATTCA GACCCTGCCT TGCGCACTAT CGATGAAAGC ATGCAAAAGG ACAAGGCTCA AAACAATGAC TGA
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Protein sequence | MNNKGIRHNI IAGMLMGAAM IAAPSAWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT VRGKINVRSY DLLNDDQYYQ FFLNVLQVYG YAVVEMENHV IKVIKDKDAK MASIRVADDK SPGVGDEMVT RIVPLYNSEA KQLAPLLRQL NDNAGGGNVV NYDQSNVLMI SGRAAVVNKL VEIVRRVDKQ GDTDVQVVAL DYASAGEIVR IVDTLYRSSA NQSQLPGQAP KVVADERMNA VIVSGDEKSR QRVIELIKRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQNLQDNKEG ASTQQGNSSK RRSDINIMAH SDTNSLVISA EPDQLRTIES VINQLDIRRA QVLVEAIIVE IAEGDNVGFG VQWGSEAGGL TQFNNIGPTI GEVGAGVWSA RETDGTTVTV GNSDGGSTTT TNPTSDGDYT LIAQALGKVN GMAWGVTTGN FAALIQAVSS DTNSNVLATP SITTLDNQEA SFIVGDEVPI ITGSTSSSNN DNPFQTVERK EVGVKLKVVP QINEGSSVKL TIEQEVSGVN GNTGVDISFS TRRLTTTVMA DSGQIVVLGG LINEEVQESI QKVPILGDIP FIGHLFKSSS SKKTKKNLMI FIKPTIIRDG MTMEGIAGRK YNYFRALQLE QQARGINLMP NTQVPVLEEW DQEAYLPDEV NDMLDRYKSG KGLSTDIRDS DPALRTIDES MQKDKAQNND
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