| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0104 |
|---|
| Symbol | |
|---|
| ID | 4278276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 117423 |
|---|
| End bp | 118337 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638132845 |
|---|
| Product | general secretion pathway protein C |
|---|
| Protein accession | YP_748805 |
|---|
| Protein GI | 114561292 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3031] Type II secretory pathway, component PulC |
|---|
| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAT TAGATAAACT GATCACCAAC GCTGCAAAAA TACCACATAA GCTATTGAGT
ATGATTGTAT TTTGGCTTGG CTTGGTCATT GTGTTGCTAC TCGCTGCACA GATCACATGG
AAGTTGATGC CAGTATCATC GCAGTCTGCG GTGTGGCAAC CATCCCCCAT ATCAGCAGGC
ACTGCAAAGC GTATTGAGCT TGCCGGTGTA CGTAACCTAT TGCTTTTTGG TCGCTTAGAC
AATAATAGCA ATAAACCCAA AGCTGAAGTC GTAGAGCAAA TCACCGATGC GCCTAAAACA
AACTTGTCTA TCCAATTGAC AGGGGTTGTT GCGTCTACCG AAGAAGCCCA AGGTTTAGCG
GTTATTGAAT CAAGTGGGCA ACAAGAAACC TATAGCTTAG GCGATAAAAT TAAAGGGACT
TCAGCTTCTT TAAAAGAGGT TTATGCCGAC CGTATTATTA TTAGTAATAG TGGTCGTTAT
GAAACTTTAA TGCTGGATGG CCTTAAATAT ACTACCCAAA GCGAAGCTAA CTCCCAGTTG
CAACAAGCAA AAGTAGGTCA ACAGGTAACC CGAGTTGATC GTCGCGATAA TCAACGTTTT
TCTGAAGATT TGTCTAATTC TCGTGATGAG TTGTTAGCAG ACCCAAGTAA AATTACAGAC
TTTTTAGCTA TTTCACCGGT ACGTAATGGT GATGAATTAG CGGGTTACCG TTTAAATCCT
GGTAAAGATG TCGCGTTGTT TAAGCAAGCG GGTTTTCAAG CTAATGATTT AGCAAAATCA
ATAAATGGAT TTGATCTGAC CGATATGGGT CAGGCATTAG AAGTGATGGC ACAACTGCCT
GAGCTCACCG AAATGGCTGT CATGGTTGAG CGTGAAGGGC AGTTGGTCGA AATCATGTTT
AGTTTGCCAG AATAA
|
|---|
| Protein sequence | MDLLDKLITN AAKIPHKLLS MIVFWLGLVI VLLLAAQITW KLMPVSSQSA VWQPSPISAG
TAKRIELAGV RNLLLFGRLD NNSNKPKAEV VEQITDAPKT NLSIQLTGVV ASTEEAQGLA
VIESSGQQET YSLGDKIKGT SASLKEVYAD RIIISNSGRY ETLMLDGLKY TTQSEANSQL
QQAKVGQQVT RVDRRDNQRF SEDLSNSRDE LLADPSKITD FLAISPVRNG DELAGYRLNP
GKDVALFKQA GFQANDLAKS INGFDLTDMG QALEVMAQLP ELTEMAVMVE REGQLVEIMF
SLPE
|
|---|
| |