| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0101 |
|---|
| Symbol | |
|---|
| ID | 4278273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 114063 |
|---|
| End bp | 115604 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638132842 |
|---|
| Product | phosphoenolpyruvate carboxykinase |
|---|
| Protein accession | YP_748802 |
|---|
| Protein GI | 114561289 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1866] Phosphoenolpyruvate carboxykinase (ATP) |
|---|
| TIGRFAM ID | [TIGR00224] phosphoenolpyruvate carboxykinase (ATP) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.539498 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGATG TATCTAACCG CGTTCACCTC AACCCTACGA CTGCACAGCT AGTAGAAATC
GCGCTTCTTC GTGGAGAAGG TCAACTGACC GCAAATGGTG CCTTAGTGGC CAAGACAGGA
GAAAGAACGG GTCGTTCACC TAATGACCGA TTTATCGTCA AAGAGGCAAA TACAGAAGCC
GACATTGAAT GGGGCAAAGT AAACCGCCCG TTTGATGCAG GCAAATTTGA TGCATTATGG
GGCCGGGTAG AAGCCTACCT TGCAGACAAA GAGTTGTTTA CATCTGAACT CGAAGTTGGT
GCTGATGATG AACATTATAT TCCTGTACGT GTAACCACTG AGTTCGCATG GCATCAATTG
TTTGCACGTA ATTTATTTAT CGCTCCAGAA ACCTTTAATC GTGGTAACAA AGACACCTGG
CAAATCATCA ATGCGCCAGG GTTCGTATGT GAACCTCAAC GTGATGGTAC AAACTCTGAA
GCCGCTGTTA TTCTCAACTT TGCCGAGCGA AAAGTACTGC TTGCTGGGTT GAAATATGCA
GGTGAAATGA AGAAGTCGAT GTTCTCGGTA CAGAACTTCT TATTACCCGC TAAAGGTGTG
CTACCCATGC ATTGTTCGGC TAACGTCGGC CACGATGGTG ATACCACATT ATTCTTCGGC
CTATCGGGTA CCGGTAAAAC CACGCTTTCA GCTGATCCAA AACGTTTCTT GATCGGTGAT
GATGAGCACG GCTGGGCACC CGGTGGCGTA TTTAATATCG AAGGCGGTTG CTATGCAAAA
TGTATCGACC TGAGCCAAAA AAATGAACCT GTGATTTGGG ATGCAATTCG TTTCGGTACC
GTACTCGAAA ACGTGGTGCT TGATGAACAG CGAGTGCCTG ATTATAAAGA TACTAGCCTG
ACCGAAAATA GCCGTGCAGC TTATCCTTTA GAGCACATTG CTCAACGTAA AGAAGATAAC
CGTGGTGCAG AACCTCATGC TGTGGTTTTC TTAACTTGTG ATGTATCAGG TGTATTACCG
CCAGTATCGG TATTAAGCAA AGAACAAGCT GCATATCACT TCTTATCAGG TTACACCGCG
AAGGTAGGCT CTACAGAAAT GGGTTCTACG TCTGCAATTC AGTCAACCTT CTCGACGTGT
TTTGGTGCAC CATTCTTCCC ACGTCCAGCT GGAGTGTATG CAGAGCTGTT GATGAAACGC
ATTGAGTCGT TTGGCAGCCA AGTTTACCTT GTTAACACTG GCTGGACCGG TGGTCCACAT
GGTGTAGGTA AACGTTTTGA TATCCCGACA ACTCGCGCCA TTGTGGATGC TATTGTCAGT
GGTGAGCTAA AAGATGTTGA AACCGTTTAT ATCGATAAAC TGAACTTAAA CGTACCTGTT
AGTGTATCGG GTGTTGATAC CGCTTTGTTA AACCCAGTCA ACACTTGGGC AGATAAAGCT
GAGTATGACA AATATGCACA GCAGCTAGCA CAAGAGTTCA GTGATAACTT TGCAAAATAT
AAAGTGTCTG AAGCCATTAA AAATGCTGGC CCTAACGTAT AA
|
|---|
| Protein sequence | MADVSNRVHL NPTTAQLVEI ALLRGEGQLT ANGALVAKTG ERTGRSPNDR FIVKEANTEA
DIEWGKVNRP FDAGKFDALW GRVEAYLADK ELFTSELEVG ADDEHYIPVR VTTEFAWHQL
FARNLFIAPE TFNRGNKDTW QIINAPGFVC EPQRDGTNSE AAVILNFAER KVLLAGLKYA
GEMKKSMFSV QNFLLPAKGV LPMHCSANVG HDGDTTLFFG LSGTGKTTLS ADPKRFLIGD
DEHGWAPGGV FNIEGGCYAK CIDLSQKNEP VIWDAIRFGT VLENVVLDEQ RVPDYKDTSL
TENSRAAYPL EHIAQRKEDN RGAEPHAVVF LTCDVSGVLP PVSVLSKEQA AYHFLSGYTA
KVGSTEMGST SAIQSTFSTC FGAPFFPRPA GVYAELLMKR IESFGSQVYL VNTGWTGGPH
GVGKRFDIPT TRAIVDAIVS GELKDVETVY IDKLNLNVPV SVSGVDTALL NPVNTWADKA
EYDKYAQQLA QEFSDNFAKY KVSEAIKNAG PNV
|
|---|
| |