Gene Sfri_0078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0078 
Symbol 
ID4278162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp92590 
End bp93282 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content44% 
IMG OID638132819 
ProductMOSC domain-containing protein 
Protein accessionYP_748779 
Protein GI114561266 
COG category[S] Function unknown 
COG ID[COG2258] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAAGC GATTGGTAAA GAGTATTTCT GGGCTGTATT TAGGCGACCA AGTGCAAATG 
CATAACGGTG TTGCCAGTTG TATTAACCAA AAACATGCCG CTAAGCAGTT GACCGTGCAA 
TTTGACCACG TAATCGGCAA TCGTGAGGCC GACCCTAAAC ATCACGGCGG CCTCGATAGG 
GTGTTGCATC ATTTTCCGCG TGAGCATTAT GGTCAATATC GCCGCTGGGA TTTAATGTCT 
ACGTTTTGTG ATGCCCCTTC AATGGGTGAA AATATCAGTA CCGTTGGCCT TAATGAAGCA 
CAGGTTAATA TCGGTGACAT CGTTCAAATT GGTGATGTGA CATTACAAGT GACTCAACCT 
CGTTCTCCTT GTTTTAAGCT CAATTTACAG TTTGGCCATC CTAAATTTGC CTTAGCCATG 
CAAGAAAGTC GTATGTGCGG TTGGTTTTAT CGGGTGCTGT CTGAAGGTGA CATTCGTCCG 
AGTGACAGTA TTTTTCTGCT AGAGAGAAAA TCGGATATCA GTGTGGCTAA AGCGATGCAG 
ATTTATTTTT TAGCTGAATT TGATGCAGAA CAATATCAGA CATTGCTTGG GTGCGAAGGC 
TTAGCGCAAA GTTGGGTTAA CTCATTACAA CGCCGACTAG ATCTGCAAAG TATAGAAGAT 
TGGGCAATGC GCTTATATGG CAACGCCAGT TAA
 
Protein sequence
MSKRLVKSIS GLYLGDQVQM HNGVASCINQ KHAAKQLTVQ FDHVIGNREA DPKHHGGLDR 
VLHHFPREHY GQYRRWDLMS TFCDAPSMGE NISTVGLNEA QVNIGDIVQI GDVTLQVTQP 
RSPCFKLNLQ FGHPKFALAM QESRMCGWFY RVLSEGDIRP SDSIFLLERK SDISVAKAMQ 
IYFLAEFDAE QYQTLLGCEG LAQSWVNSLQ RRLDLQSIED WAMRLYGNAS