| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0077 |
|---|
| Symbol | |
|---|
| ID | 4278161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 91451 |
|---|
| End bp | 92296 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638132818 |
|---|
| Product | ribokinase-like domain-containing protein |
|---|
| Protein accession | YP_748778 |
|---|
| Protein GI | 114561265 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0524] Sugar kinases, ribokinase family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.775198 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAATA TTCTTTTGCT TGCCAATATC AATTGTGATC GCATTTTAAT GCTTGATAAG
CCCTTACAAA CGGGTGGTCG ATTTCATTAT CAGGATGGTG GATTGCGTTT AGGTGGCGGC
GGCGCAAACA CGGGATTAGG TTTAGTGTGG GCTCAACATA ATGTTTCACT GGTAAGTGAA
GTCGGTAGCG ATGACATCGG CGACTGGATT TTAGCTAAAG CCAGTACCTT AGGGCTTGAT
TGTCGTTTAG TACATCGTTT TGTTGGTAAT ACTTGTGAGA TGTTACTGGT GATGACGCCT
GATGGTGAAC GAACCATTAT TCGACCTCAG CGACCTATTT TTGAACTTCC TGCACCACCA
GACTGGCAAC ATTGGGATGC TTTTTATATT AACTCTTCAG CCAAAGGCGC TGGTGCTTGG
GCAGCTGATG CGATGGTGAG CAACCCTAAC TGCAAAGTGA TATCGCAATT AGCCAAGGAT
GAGCGTAATC GTCCTTGTCA TGTGTTGATT GCGTCAATTA CTGATATGCA AGGTCGTTGC
AACCAGGATC CATGGCGATT TGCACAGGCT ATTGCTGGCA ATGCATTAGA ATACTTTATT
GTGACCGACG GCGACAAAGG GGCGATGGTG TACAGCGCTG CTGGAGAACA ACATGTGCCA
GCTGTCATTG CCGATGTGGT CGATACTACG GGAGCAGGGG ATGCTTATGC AGCAGGCGTT
ATTCATGGCC TATGCGAGCA GATGCCTATT ACAGATGCGA TGCATGAAGG TGCGTTGTGG
GCATCATTTG CGGTAGCAAC AAAAAGCTCG ATTCCTGGTG AGGCACTTAA ACAGTATCTA
GCCTAA
|
|---|
| Protein sequence | MANILLLANI NCDRILMLDK PLQTGGRFHY QDGGLRLGGG GANTGLGLVW AQHNVSLVSE
VGSDDIGDWI LAKASTLGLD CRLVHRFVGN TCEMLLVMTP DGERTIIRPQ RPIFELPAPP
DWQHWDAFYI NSSAKGAGAW AADAMVSNPN CKVISQLAKD ERNRPCHVLI ASITDMQGRC
NQDPWRFAQA IAGNALEYFI VTDGDKGAMV YSAAGEQHVP AVIADVVDTT GAGDAYAAGV
IHGLCEQMPI TDAMHEGALW ASFAVATKSS IPGEALKQYL A
|
|---|
| |