Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0074 |
Symbol | |
ID | 4278158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 88420 |
End bp | 89289 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638132815 |
Product | transcriptional regulator, AraC family protein |
Protein accession | YP_748775 |
Protein GI | 114561262 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGAGA TAGCAACATT AATGGCACAG CTTGCCCCAA AAGAAGGGGT CAATGATACT CACTTATCTG GCGTGCATGT GTTTCGTAGC TCACAATATG GTGCGCGCGG GCCAATGTGC TATTCACAAG GCGTGCTTAT TGTTGGCCAA GGTAAAAAGC GGGTCTATTT AGATAATCAA ACCTTTGAAT ACGACCGTCA GCACTCATTA GTGATGACCG TGCCATTGCC AGTAGAATGT GAAACCTTTG CCAGCATTGA AGAACCTGTG CTGGTGTTGA TGGTTGATAT TGATTTAGTA CAACTCAATT ACATTATCCG TTTAATGGAT GAGCATCATC AAATCCCTAA AGATTTAAAC GAATCGCGCC AGAGTGGTTT TTTTGTTGCT GATAACACTG AAGATATGGA TTGCTGTGTT ATTCGGTTAT TACAGGCGTT GCAGTCGCCG TTAGAAGCAA AAGTAATGGG TGAAGCGTTA GTGCTTGAAT TATTATATCG CCTATTGGAT TCACCTGATG CTGCACCACT CTATGCGTTG TCGTTAAGTC ATACCCGTTT ATCGAGGGTA GAAAAAGCGC TTAACTACAT TCATAAGCAT TATGGTGAGT CGGTTGAAGT TGACACATTA GCAAGCTTGG TGAATATGAG TCCATCGGCA TTCCATCGTA GCTTTAAAGA AGTTACTGCT TCATCACCAA TACAATATTT AAAAAAGATT CGCCTCAATA AAGCCAAAGC GTTATTACAA CTGCAAAATC TAAAAGTAAA AGAGGTATCA ACTCAGGTGG GTTATGAAAG TACGGCTCAA TTTAGCCGTG AGTTTAAACG CTACTTTGAT CAAAGCCCTG GCGAGTGCGC TAGATTATAA
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Protein sequence | MNEIATLMAQ LAPKEGVNDT HLSGVHVFRS SQYGARGPMC YSQGVLIVGQ GKKRVYLDNQ TFEYDRQHSL VMTVPLPVEC ETFASIEEPV LVLMVDIDLV QLNYIIRLMD EHHQIPKDLN ESRQSGFFVA DNTEDMDCCV IRLLQALQSP LEAKVMGEAL VLELLYRLLD SPDAAPLYAL SLSHTRLSRV EKALNYIHKH YGESVEVDTL ASLVNMSPSA FHRSFKEVTA SSPIQYLKKI RLNKAKALLQ LQNLKVKEVS TQVGYESTAQ FSREFKRYFD QSPGECARL
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