| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0071 |
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| Symbol | |
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| ID | 4278155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 84393 |
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| End bp | 86246 |
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| Gene Length | 1854 bp |
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| Protein Length | 617 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638132812 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_748772 |
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| Protein GI | 114561259 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0689126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGGGAT TTACTGCAGT TTTTCTATGT GTATTGTTAT CGTTATGCTC GATGCATATA
CCTGCAACGA CGGCTAAGTT AACAGCCCAA GAAGAAACGA AACAACAAAC CAGTTCAGCA
TTAGAGCAGT GTAAAGCCCG TATAAAACAG GTGTCCCCCC AAGCCAGCTT GAGCTTTTGC
AGCCAACAAT TCAAAATATT AGACATTGAT AAATACCCCA TCGTTGCCGC CAAGTTACAA
CTAACCTTAT ATGATATTTA CCAAGAGTTA GGTGAAAAAG TCGCTGCGGA ACAAATGCTT
GATGAGGTTA AAAGCAGCGC TGCATTTACT CAAAATGTCG ATGTTCAATA TCTTTGGTTA
CGTAAGAAAG CCGCGGAAAA ACTTTATAGA AAGTCCTATC AAGAAGCTAA AACCTTATTT
GAACAAGCTT TTAGCATTGC TAAAACCCAA GAGTCAGAAA TTTGGTTAGC GAAAAGTTAT
AACGATTTAG CACTCACTGA ACAGTATTTG AATCAATATG ACAAAGCATT GAGTTACTAC
CAGAAGAGTT TAGCGATTAA AGAGGCTCTA GGTAATGACT TTTATACTGC GATAACCCTC
AACAACCTTG GTCTGATTTA TAAAAAACTC GAAAAATTTA AAGAATCCCA GCGCTATTTT
GAACTATCAC TGGAGCATTA CTTACGCTAC ACAAGTCATA ATATAGATAT TCATGTTATC
GGTTATATGT CGCATCTCTA CGGAAACCTT GCTGAGATAT ATAATATAAA CAACCAGTTT
AATAAGAAAA ACTTCTACAG TAATAAGGTC ATCGAAGCCT ACAACGATAA CCTTGTCGGT
GACGATAGGC TTTCTGCGCT AATTAATGTA GCCACCATCC ATATCAATGC TAATGAATTT
ACGCCCGCTC TAGATGTCGC CAACACATTA TCGGAATATT TAACCCGCGA TGACCATTCG
TTTCATGACG TAATTTTCTA TTTAAAAGCC CAAATAGCCA CACATCAAAA AGATGCGACT
CAGGCAATAA AATTTATTGA AAGCGCAATG GACTATAGCG ACACTAAACA AGATTCATTG
CAAAAAATGA ACATTTATCA CTACGCAAGC GAGTTATATT ATGACAATGG TCGCCCTTAT
GAGTCCCTGG TTTATCTAAA GAAATATCAA CAGTTGCATG AGATCTTATT GGAGAAAAAA
TACAGTGAGA ACATTAAAGT CATTCAAAGC GATATAGAGA ATGAACGAGT GCAACGAGCG
TTAGCAGAAG AGCAAATTGT CGGTCAACAG AAGAGCCAAA AAATTGATAA ATTACTTAAT
TTAATCCTTG GAATCACCAG TGTTGGCTTG TTAGTCGGCT TTATTGTGAG CTTTTATATT
TATAGAAAAC GTAAAGCCCA GCAGCATTTA ATGACCATAA TAGAGTCACA TAAGCAGCAA
TTATTTTTAT TATCGAATGA CGATACAGCA GAGCAAGACG ACGCCCAGCA ACAGGAATCT
ACGCCATTAT CGCCTTCAGA ATTAACAGCT TCTTTTGCGG AGTTATTAGT GAATACTATG
ATTGATTGCA TCAGTATTTG GGAGAAAAGC ACTAAAACTA ATAAAGTAGA ATTAGCCGAC
AGAAGCCAAA TTTGGACGAT ATCTATCGAT TCTGGCCGTC TAAGAACACG TTCTTTAGAT
AAATACCTAC AGGTAAAAAA ATTACCCGCT AATCCACGCT GGCGTAATGT GGTTAAAACA
TGTCACTTCA TTTTATCTGA ATGCCACCTG TCAAATGATG ATAGGACATT ACTGACCTCG
CACCTTGACC AAATAATGCA AGTGATCAAG AGCGAGTCAT TAGGCACATC GTAA
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| Protein sequence | MKGFTAVFLC VLLSLCSMHI PATTAKLTAQ EETKQQTSSA LEQCKARIKQ VSPQASLSFC
SQQFKILDID KYPIVAAKLQ LTLYDIYQEL GEKVAAEQML DEVKSSAAFT QNVDVQYLWL
RKKAAEKLYR KSYQEAKTLF EQAFSIAKTQ ESEIWLAKSY NDLALTEQYL NQYDKALSYY
QKSLAIKEAL GNDFYTAITL NNLGLIYKKL EKFKESQRYF ELSLEHYLRY TSHNIDIHVI
GYMSHLYGNL AEIYNINNQF NKKNFYSNKV IEAYNDNLVG DDRLSALINV ATIHINANEF
TPALDVANTL SEYLTRDDHS FHDVIFYLKA QIATHQKDAT QAIKFIESAM DYSDTKQDSL
QKMNIYHYAS ELYYDNGRPY ESLVYLKKYQ QLHEILLEKK YSENIKVIQS DIENERVQRA
LAEEQIVGQQ KSQKIDKLLN LILGITSVGL LVGFIVSFYI YRKRKAQQHL MTIIESHKQQ
LFLLSNDDTA EQDDAQQQES TPLSPSELTA SFAELLVNTM IDCISIWEKS TKTNKVELAD
RSQIWTISID SGRLRTRSLD KYLQVKKLPA NPRWRNVVKT CHFILSECHL SNDDRTLLTS
HLDQIMQVIK SESLGTS
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