Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0057 |
Symbol | |
ID | 4277652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 70083 |
End bp | 72932 |
Gene Length | 2850 bp |
Protein Length | 949 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638132798 |
Product | twin-arginine translocation pathway signal |
Protein accession | YP_748758 |
Protein GI | 114561245 |
COG category | [C] Energy production and conversion [R] General function prediction only |
COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing [COG3383] Uncharacterized anaerobic dehydrogenase |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGATTAA CCCGCAAAAC AGACACGGCC ACCAAAGCTG AAAAGTCAGG CCTAGGTCTT AACCGACGTC AATTCCTCAA GTCTGCCAGT TTGGCGACGG GTGGTATTGC AGCGGCTTCA ATGCTTGGCG CAGGTATGAT GCGTAAAGCT GAAGCTAAAG ATGTACCGCA CAACGCACCT ACAGAAATAA AACGGACGAT TTGTTCACAT TGTTCAGTAG GTTGTGGTGT TTATGCTGAA GTTCAAAATG GTGTGTGGAC AGGGCAAGAG CCTGCGTTCG ATCATCCATT TAACCAAGGT GGACATTGTG CTAAAGGCGC AGCATTACGT GAGCATGGTC ATGGTGAAAA ACGCTTAAAA TACCCAATGA AGCTAGAAGG TGGTAAATGG AAGCGTCTAT CATGGGATCA AGCCATCAAT GAAGTAGGCG ACAAAATGGA GTCGATTCGT CAAGAGTCTG GTCCTGATTC AGTTTACTTT ATGGGTAGTG CTAAATTTTC GAACGAACAA GCTTATATGT ATCGCAAATT AGCAGCAATG TGGGGCACTA ACAACGTCGA TCACTCTGCT CGTATTTGTC ACTCTACCAC GGTAGCCGGT GTTGCAAACA CTTGGGGCTA CGGTGCGCAA ACTAACTCGT TTAACGACAT CCGCAATTCA AAATGCATGA TGTTTATTGG GTCTAACCCA TGTGAAGCTC ACCCAGTGGC GATGCAACAC ATTTTGATTG GTAAAGAACG CGGTGCCAAA ATCATCGTAG TCGATCCACG TTTTACCCGT ACAGCGGCTA AGTCTGATGA ATATGTCCAT ATTCGTCCAG GTACTGACAT TCCATTTATT TATGGTCTGT TATGGCACAT TTTCGAAAAC GGCTGGCAAG ATGATTCATT CATTTCTCAA CGAGTATACG GCATGGAACG TATCCGAGAA GAAGTGAAAA AATACACTCC AGAAGAAGTC GAGCATATTG CCGGTGTGCC AAAAGCACAA ATGTACCGTG TTGCGAAAAT GATGGCAGAA ACTAAGCCTG GCACTATCGT TTGGTGTATG GGTGGTACTC AGCATCACAT TGGTAATGCT AACACTCGTG CTTACTGTAT TTTACAGCTT GCCCTTGGCA ACATGGGTAT AGAAGGCGGC GGAACTAACA TTTTCCGTGG TCACGATAAC GTACAGGGTG CGACTGACTT TGGTTTGTTA TTTGATAACT TACCTGGTTA TTACGGCTTA ACCTCAGGCG CATGGGACCA TTGGGCCAAT GTGTGGGACC TTGAACCAAA GTGGATCACC GAACGTTTTG ATCAAGGTGA ATACTTAGGT CAATCACCAC AAACATCTGC AGGTATTCCT TGTTCGCGTT GGCACGATGG TGTGTTAGAA GACAAAACCA AAATTGCCCA AAAAGACAAT ATTCGTCTGG GATTCTTTTG GGGTCAGTCT GTTAACACCG AAACTCGTGG TCGCGAAGTA CGTGAAGCAC TGAATAAAAT GGATACCATT GTGGTCGTTG ATCCATTCCC AACCATGGCG GGTGTTATGC ACGAACGCCA AGATGGAGTG TATTTATTAC CCGCGGCAAC TCAGTTTGAA ACTTATGGTT CAGTGTCTGC TTCAAACCGT TCACTGCAGT GGCGTACGCA AGTTATCGAA CCATTATTTG AGTCATTACC TGATCACACT ATCATGTATA AACTGGCCAA AAAATGGGGC GTTGCGGACC AATTCTGTAA GCACATCAAG GTTAATGGCG ATGAGCCATT AGTGGAAGAC ATTACACGTG AATTTAACAC CGGTATGTGG ACTATTGGTT ATACAGGCCA AAGCCCTGAA CGTTTGAAAA TGCACCAAGA AAACTGGGGC ACATTCGACG TTAACTCACT TGAAGCACCC GGCGGCCCAG CTAAAGGCGA AACCTATGGT TTACCTTGGC CATGTTGGGG TACACCAGAG CAGAAACACC CTGGTTCTCA AATCTTGTAC CGCACCGGAC GTGAAGTTAA AGACGGTGGT GGTAACTTCC GTGCACGTTA TGGTGTTGAA CATAACGGCA ATAACATTCT TGCTGAAGGT TCTTTCTCAA AAGGCTCTGA AATTCAAGAT GGTTACCCAG AGTTTACAGC CGACATGCTA AAACAGCTTG GTTGGTGGGA TGACCTAACA GCAGAAGAAA AAGTCAAAGC TGAAGGTAAA AACTGGAAAA CTGATATCTC TGGCGGTATT CAGCGTGTGG CAATTAAGCA TGGTTGTATG CCTTACGGTA ACGCAAAAGC GCGTTGTATC GTGTGGAACT TCCCTGACGA TATTCCATTA CATCGTGAAC CGTTATACAC CCCTCGTCGT GACCTAGTGG CTAAATACCC TACTTATGAA GACCGTATGG TGGCTCGTCT ACCAACGCTT TATAAAACCA TTCAAGACAA GGATTTTGCT ACCGACTACC CACTTGCAGT AACAACCGGA CGTTTGGTTG AATACGAAGG TGGTGGTGAA GAAACCCGTT CAAACCCATG GCTTGCAGAA CTACAGCAAG AAATGTTTAT CGAGATCAAC CCAGCAGATG CTGCAGATCG CGGTTTACGT GATGGCGATG ACGTATTTGT TCACAGTCCA GAAGGTGCAA AAATTACCGT TAAGGCAATG GTGACACCAC GTGTTATTGC AGGTGAATGT TTTATGCCAT ACCACTTTGC AGGCGTATTT GAAGGCAAGA GTTTAGCCAA AAACTACCCT GAAGGAACCG TTCCTTATGT GATTGGCGAA TCTGCCAATA CCGTAATGAC CTATGGTTAT GATGTCGTAA CGCAAATGCA AGAGACCAAG TCTAGCTTGT GTCAAATAAG CAAAGCCTAA
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Protein sequence | MRLTRKTDTA TKAEKSGLGL NRRQFLKSAS LATGGIAAAS MLGAGMMRKA EAKDVPHNAP TEIKRTICSH CSVGCGVYAE VQNGVWTGQE PAFDHPFNQG GHCAKGAALR EHGHGEKRLK YPMKLEGGKW KRLSWDQAIN EVGDKMESIR QESGPDSVYF MGSAKFSNEQ AYMYRKLAAM WGTNNVDHSA RICHSTTVAG VANTWGYGAQ TNSFNDIRNS KCMMFIGSNP CEAHPVAMQH ILIGKERGAK IIVVDPRFTR TAAKSDEYVH IRPGTDIPFI YGLLWHIFEN GWQDDSFISQ RVYGMERIRE EVKKYTPEEV EHIAGVPKAQ MYRVAKMMAE TKPGTIVWCM GGTQHHIGNA NTRAYCILQL ALGNMGIEGG GTNIFRGHDN VQGATDFGLL FDNLPGYYGL TSGAWDHWAN VWDLEPKWIT ERFDQGEYLG QSPQTSAGIP CSRWHDGVLE DKTKIAQKDN IRLGFFWGQS VNTETRGREV REALNKMDTI VVVDPFPTMA GVMHERQDGV YLLPAATQFE TYGSVSASNR SLQWRTQVIE PLFESLPDHT IMYKLAKKWG VADQFCKHIK VNGDEPLVED ITREFNTGMW TIGYTGQSPE RLKMHQENWG TFDVNSLEAP GGPAKGETYG LPWPCWGTPE QKHPGSQILY RTGREVKDGG GNFRARYGVE HNGNNILAEG SFSKGSEIQD GYPEFTADML KQLGWWDDLT AEEKVKAEGK NWKTDISGGI QRVAIKHGCM PYGNAKARCI VWNFPDDIPL HREPLYTPRR DLVAKYPTYE DRMVARLPTL YKTIQDKDFA TDYPLAVTTG RLVEYEGGGE ETRSNPWLAE LQQEMFIEIN PADAADRGLR DGDDVFVHSP EGAKITVKAM VTPRVIAGEC FMPYHFAGVF EGKSLAKNYP EGTVPYVIGE SANTVMTYGY DVVTQMQETK SSLCQISKA
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