| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0042 |
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| Symbol | |
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| ID | 4278249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 54434 |
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| End bp | 55774 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 638132783 |
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| Product | coproporphyrinogen III oxidase |
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| Protein accession | YP_748743 |
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| Protein GI | 114561230 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCGAAA AGTACAATTA CAGCGGTCCC CGTTATACTT CTTACCCGAC CGCACTAGAG
TTTGACGATG CCTTTACTGA GCAAAACTTA CTGACATCTA TTAAAAACAG TAAGTCAGAT
AAACTGTCGC TATATGTGCA TATTCCTTTT TGCGCCAAGC TTTGCTACTA CTGTGGTTGT
AATAAAATTA TTACTCGCCA CTCTCACAAA GCAGATCAAT ACATTGAATA TCTGGCCACT
GAGATTATTA AACGCGCCCC ATTATTCAAA AATTATACCG TAACCCAAAT GCATTGGGGT
GGCGGTACAC CGACATTTTT AAGCCCTGAA CAAATTCTTA AACTGACCGC ATTAATTAAA
CAACACTTTA ATTTTGCTGA TGTGGGTGAA TACTCAATTG AAGTTGACCC GCGTGAGATA
GAGCTCAGCA TGTTAGACAC CTTAAAAGAA GCTGGGTTTA ACCGGGTATC TATTGGTGTT
CAAGACTTTA ATAAAGAAGT ACAAATTGCC GTTAACCGTG AGCAAGACGA ACAATTTATT
TTCGACTTAA TTGCCAGAGC TAAAGAACTC GGTTTTGTAT CAACGAACGT TGATTTAATT
TACGGTTTAC CGCTGCAAAC GCCAGAAACG TTTGCGAAAA CTATTGCGCG CATTATTGAG
CTATCGCCTG ATCGTCTATC TGTCTTTAAC TATGCACATT TACCATCGCG TTTTGCTGCA
CAACGTAAAA TTAAAGAACA TGATATGCCT GCTCCACAAC AGAAATTAGA TATGCTTCGC
CAAACGATAG AATCGTTAAC AGATGCGGGT TATCAATTTA TTGGTATGGA CCATTTTGCC
AAACCCAATG ATGAGTTGGC AAAGTTACAA AATGCCGGCA AATTACATCG TAACTTCCAA
GGGTACACCA CCCAAGAAGA ATGTGACTTG CTTGGGTTAG GGGTATCATC TATCAGCCAA
ATTGGCGACT GCTATGCCCA AAATCAAAAA GATATTCGTC CATACTACGA ATCTATTGAT
GCTAATGGTC ATGCATTATG GAAAGGCTGT AGCTTAAATC ACGATGATGA AATTCGTCGC
GCGGTCATTA AACAGATTAT CTGTCATTTT GATTTAGACA TGGACAAAAT TGAACAAAAG
TTTGCCATTA ACTTTGATGA ATATTTTGCT GAAGATCTTA AACTATTGCA AACATTCATA
AATGATAAAT TGGTTGATAT CACTGATCGA AAGTTAACAG TAAGCCAGAC CGGTCGTCTA
CTTATTCGTA ATATCTGCAT GTGTTTTGAT GTATATTATC GTCAGAAAGC CCGTCAGCAG
CAGTTTTCAA GAGTTATTTA A
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| Protein sequence | MIEKYNYSGP RYTSYPTALE FDDAFTEQNL LTSIKNSKSD KLSLYVHIPF CAKLCYYCGC
NKIITRHSHK ADQYIEYLAT EIIKRAPLFK NYTVTQMHWG GGTPTFLSPE QILKLTALIK
QHFNFADVGE YSIEVDPREI ELSMLDTLKE AGFNRVSIGV QDFNKEVQIA VNREQDEQFI
FDLIARAKEL GFVSTNVDLI YGLPLQTPET FAKTIARIIE LSPDRLSVFN YAHLPSRFAA
QRKIKEHDMP APQQKLDMLR QTIESLTDAG YQFIGMDHFA KPNDELAKLQ NAGKLHRNFQ
GYTTQEECDL LGLGVSSISQ IGDCYAQNQK DIRPYYESID ANGHALWKGC SLNHDDEIRR
AVIKQIICHF DLDMDKIEQK FAINFDEYFA EDLKLLQTFI NDKLVDITDR KLTVSQTGRL
LIRNICMCFD VYYRQKARQQ QFSRVI
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