Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0038 |
Symbol | |
ID | 4278245 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 47851 |
End bp | 50334 |
Gene Length | 2484 bp |
Protein Length | 827 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638132779 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_748739 |
Protein GI | 114561226 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.104511 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCCTCGGT TGCCGAAACT TTCTCTGTCT TTGCTTGTTC CTGCATGTAT TTTTATCCTT TACCTTGGCT TGGTATGTGG GGAGTATTTC TATGAGCATG CAGAGCTAAA TGAACAACTT GCATTAAGAC AGTCAGAACA AATACAGAAA GATTTATTTA GAATGCGTCA TGTTGTGGAA TCATCTCTGT TGACGCAAGA TTTAGAACGA ATAGAGCAAG AGGTTGCTTT AGTCTCAACA GACCAAAACA TGATGGTGTA TGTAATACTT GATTCGGGTA GTGAAATTCA ATTTGCCAAT CATATTATTT GGCGAGAAAG TAATGCTACT AATGTGTTAG AGGGCTATTC GGCTGATTTA CATAGAACGG TTATCACCAA TAATAAACCT TTTTTAAAGG TGAATTTCGA TCGTTTATCA ATTCAGGCTT ACTATCCCCT TAATGCAAAT TCTCGTTACA GCTACTCGAA TTCTGTAGAG CTAATTTATT TAGAATATGA CATTGCCAAT GTCTTATCAG AAGCGGTTGA TAGTCTGTTA AAGCGCTTTA TCGAGATATG GGGAATTGGC GCTTTATTGT TGTCGTTATT CTGTGTCATG TTGCATTATT TACTGATAAG ACCGTTAACT CAATTAAGCC AAGCCGCTAA AAATCTCGAT TCTCCAGATT TCAATACTGA TATTGTGTGC ACATCGACCG AACTGGTTAA CTTACGCGAC TATTTGAATC AGGTTAATGG TCGGTTATCC CGCAGTAAAA AACGTCTAAA TGATGCAGAG CAACGTTGGC TTTTTGCAGT TGAGGGCGCT CGTAATGGTA TTTGGGATTG GTGTATTGCT ACTGGCGATG TGTTTGTTTC TGATCGATGG AAAGATATCT TAGGCTACCA ACCTTATGAG CTAGATAATG ACTATTCTGT CTGGGAGTCT CGTTTACATC GAGATGATAA GGCGCAGGTA TTAAATACCT TACAGAATTA CATTAATAAC CAGCATGAAT ATTATGAAAG CGTGCATCGT TTACGTCATA AAGACGGTCG TTATATTTGG ATTTTGGATC GTGGAAAAAT AGTTGAGTGG GATGAACTTG GGCGTCCATT ACGAATTATT GGCACCATAA CAGATGTTTC TGGTGATGTT AAAAGCCAAC AAATTACTCC TGATAAGCAG GGACATAGTG GCCTCACGGA TTTAATAAAT CGTGATGTAT TAGCCGATCA GCTTTATGAT TTACAGGTTC TTAGTCGCAA GACTGGTCAG TTTTCTGCGC TTCTTATGAT CAATTTAGAT AATTTTAAAT TAATTAATGA TGCTTTGGGT CACCAACTTG GCGATAGATT ATTAATGCAG ATAGCAGCCC GCTTATCTGG TACATTCTCT AGTGCTGGTT TGGTTGCTCG CCTTGGAGCA GATGAGTTCG TTATTCTAGC CAAAAATTTT GGCAATGAAA TTGATCAACC AAGTAAACGT GCATTAGCAC TGGCTAGTGA AGTGAGGCAG TTAATTGGCC GCGGTTACAC CATTTCAGAG CAAAATTTAT CAATTTCAGC TCGGATTGGG TTAGTTGTTT TTGATGGTAT TGAGTCATTA GAACCTCAAG TACTGTTGGC TCGTGCAGAT AGCGCTATGG AGCAAGCAAA AGATAGTCGC TCTAATGGTT GTGCCATTTA CCAACCTGAA TTAGATCAAA ATCAAGTTCA ACCATTCAAA TTACAAAACG AGCTGAAACT GGCTATCCAG AACAAGCAGA TGTCATTGGT TTATCAACCC GTTGTTGATC AGGCTGGGCA GCTCAATAGC ATTGAAGTAC TAATGCGTTG GTATCACCCG CAGTACGGAT ATATTAATCC ACGTAAGTTT ATTGCGTCAG CTGAACTGTC TGACTGTATT TTTGAATTAG AGCTGTGGGC ATTAGATCAA GTCTGTGAAC TTATTCAAAC ACTTCAACAG GCAAACGCGA CAGTGCCTTT AATGTCATTA AATGTATCTT CTCGTCACTT TCATCAAGAT CACTTCGTAA ACGTAGTAAT GAATCGAATC AATGCAGCAC ATGTCTCAGC TACATTGTTT CAGTTCGAGT TATCTGAAGA TGTATTCGTG GTCAATGCTA ATGTTGCCAG AAACAAAATT GCTGAGTTCC AACGATTCGG TGTGAACATT GCGATGGATA ATTTTGGTGG GGGATCTTGC GCAGTCCATT TATTACAAGG TATTCGTTTT TCACAAGTGA AGCTAGCTGC TGTCTATATT GAAGATATAG AATATAACCC TGAAACCTTT AACATTGTGA ATGCCATTGT TGAGTTTGCT ACTAAGTTAA ACTTTCCTGT AGTGGCTAAA CAAGTTGAGA ATAAGCAGCA ACTTAATTTA CTGACCCATG CAAAATGTAC TTGGTTTCAA GGCTATATTA TCAGTCGACC ACTAGCTCAT GACGACATTA TTCAATTAAT TAAGACACAG CTATCTTTGA GTGTTGTGCC ATAA
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Protein sequence | MPRLPKLSLS LLVPACIFIL YLGLVCGEYF YEHAELNEQL ALRQSEQIQK DLFRMRHVVE SSLLTQDLER IEQEVALVST DQNMMVYVIL DSGSEIQFAN HIIWRESNAT NVLEGYSADL HRTVITNNKP FLKVNFDRLS IQAYYPLNAN SRYSYSNSVE LIYLEYDIAN VLSEAVDSLL KRFIEIWGIG ALLLSLFCVM LHYLLIRPLT QLSQAAKNLD SPDFNTDIVC TSTELVNLRD YLNQVNGRLS RSKKRLNDAE QRWLFAVEGA RNGIWDWCIA TGDVFVSDRW KDILGYQPYE LDNDYSVWES RLHRDDKAQV LNTLQNYINN QHEYYESVHR LRHKDGRYIW ILDRGKIVEW DELGRPLRII GTITDVSGDV KSQQITPDKQ GHSGLTDLIN RDVLADQLYD LQVLSRKTGQ FSALLMINLD NFKLINDALG HQLGDRLLMQ IAARLSGTFS SAGLVARLGA DEFVILAKNF GNEIDQPSKR ALALASEVRQ LIGRGYTISE QNLSISARIG LVVFDGIESL EPQVLLARAD SAMEQAKDSR SNGCAIYQPE LDQNQVQPFK LQNELKLAIQ NKQMSLVYQP VVDQAGQLNS IEVLMRWYHP QYGYINPRKF IASAELSDCI FELELWALDQ VCELIQTLQQ ANATVPLMSL NVSSRHFHQD HFVNVVMNRI NAAHVSATLF QFELSEDVFV VNANVARNKI AEFQRFGVNI AMDNFGGGSC AVHLLQGIRF SQVKLAAVYI EDIEYNPETF NIVNAIVEFA TKLNFPVVAK QVENKQQLNL LTHAKCTWFQ GYIISRPLAH DDIIQLIKTQ LSLSVVP
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