| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0025 |
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| Symbol | |
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| ID | 4278302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 30167 |
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| End bp | 31273 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638132763 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_748726 |
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| Protein GI | 114561213 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACTGCA CCATGAAACG CCTACTTTTA CTTGCTTTTT TATGTCTAAA TTCTTATTGG
GTCAATGCTG ATACATTAAC CTTGAAAGCT GGACACCCAG ATACGTATAT CGTCAAAAAG
GGCGATACTC TGTGGGATAT TTCTGGTTAT TTTTTAAATG ACCCATGGCG TTGGCCTAAA
TTGTGGGGGA GCAATCCACA AATTGCTAAC CCACATTTAA TTTATCCTGG TGATCGACTG
ACATTAGTCT TTATTGATGG TCAGCCCCGT TTGGTTGTTA AGCAGCACAT TAAAAAGAGT
CCAGAAGGAC GTGTGATATC CAAAGATGGT CCAATTCCTC CTGTTGACCT TGCGTTAATT
AAGCCCTATT TAGTGCAGAA TAGAGTGGTC GATCCTACTT GGTTAGCAGG ATTGCCGATT
GTCATGAGTG GTGAAAGTCC ATCAATTCAT CATGTGGTCA ATGACGTTGT ATATGTGAAT
GCGAAGCTTG AGCAAGGTCT TAAAGTGGCA ATTTATCAAA CTGGACGTGA GTTTTTTGCT
CCAGATAGCG GTGAATTATT AGGCCAAGAA CTTATTTTAA CTTCGAGTGG ACGTGTTATT
GAGTCTGGCG ATATATCAAA AGTTGAATTA CTGAGCAGTT TACGTGAAAC CAAAGGTGGC
TTTCATGTTG CACCTGTAGA AGATGAAGCG TTAATGTCTG CTTATTTTAT TCCTAAAGCG
GCAGAGTTAA GTGTTGCTAC TTCTATTATC GGTACTATTG GTCATATTCG CGAAGCGGGT
AAGTTAGACG TTGTCTATAT TGATCGTGGT GCCAATGACG GCGTTGAGAC TGGACATGTT
TTTTCAATGT TCCGTGATGG CGAAAGCATT ATTATTGATA ATGATGGTAA TCCTGTTCGC
CCTCTTGACC GTTCATCTTA CGATAAAGTA CTGGCTAATT TTTCAGAAGA TACCGCATAT
AAAATGCCCG ATGTTTTTCA TGGTAATTTA ATGGTTTTTA AAGTGTTTGA TAAAACCAGT
TTAGGGCTGA TTATGTTTAA TGACCATCCA GTTAGAGTGG GTGATAAATT AACAAAACCA
AATCCATTGA CAATTAAAGG TGAATAA
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| Protein sequence | MDCTMKRLLL LAFLCLNSYW VNADTLTLKA GHPDTYIVKK GDTLWDISGY FLNDPWRWPK
LWGSNPQIAN PHLIYPGDRL TLVFIDGQPR LVVKQHIKKS PEGRVISKDG PIPPVDLALI
KPYLVQNRVV DPTWLAGLPI VMSGESPSIH HVVNDVVYVN AKLEQGLKVA IYQTGREFFA
PDSGELLGQE LILTSSGRVI ESGDISKVEL LSSLRETKGG FHVAPVEDEA LMSAYFIPKA
AELSVATSII GTIGHIREAG KLDVVYIDRG ANDGVETGHV FSMFRDGESI IIDNDGNPVR
PLDRSSYDKV LANFSEDTAY KMPDVFHGNL MVFKVFDKTS LGLIMFNDHP VRVGDKLTKP
NPLTIKGE
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