Gene Sfri_0024 details

Gene Information

• Locus tag: Sfri_0024
• Symbol: def
• ID: 4278301
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 29528
• End bp: 30094
• Gene Length: 567 bp
• Protein Length: 188 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 638132762
• Product: peptide deformylase
• Protein accession: YP_748725
• Protein GI: 114561212
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 39
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCAGTA TAGCTAACTG GCTGAAATTT GACAGACTTG CTAAGAGTTT ATATATGCCA 
TTACTTAATG TTTTACGCTT TCCAGACGAA CGTTTACGCA CTATCGCTCA ACCTGTAACG 
GATTTCGGTC CACAATTACA GACACAAATA GATAACATGC TCGAAACCAT GTACCTAGAG 
AAAGGTATCG GTTTAGCTGC TACTCAAGTG GATTTTCATC AACAATTGAT TGTGATGGAT 
CTACAAGATG AGGTTGAACG GCCAACTATT TTTATTAATC CTCAAATAGT GGCTAGCAGT 
GGTGACTTGG CTAATGAAGA AGGTTGCCTA TCGGTACCCG GTATTTATGC CAAAGTTGAC 
CGTGCAGAAT TTGTCACCTT AAAAGCGCTA GATCGTCACG GTAAAGAATT TATCGTTGAA 
GCAGATGAGT TGTTTGCTAT TTGTATTCAA CACGAGATGG ATCACCTTAA AGGTAAACTA 
TTTGTCGATT ATTTATCGCC TCTAAAACGT CAACGCATTA AAACTAAGCT TGAAAAAGAA 
GCTCGTTTAG ATGCTAGAGA AGCATAG 

 

Protein sequence

MASIANWLKF DRLAKSLYMP LLNVLRFPDE RLRTIAQPVT DFGPQLQTQI DNMLETMYLE 
KGIGLAATQV DFHQQLIVMD LQDEVERPTI FINPQIVASS GDLANEEGCL SVPGIYAKVD 
RAEFVTLKAL DRHGKEFIVE ADELFAICIQ HEMDHLKGKL FVDYLSPLKR QRIKTKLEKE 
ARLDAREA