| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0012 |
|---|
| Symbol | fadA |
|---|
| ID | 4277695 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 15577 |
|---|
| End bp | 16740 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638132750 |
|---|
| Product | 3-ketoacyl-CoA thiolase |
|---|
| Protein accession | YP_748713 |
|---|
| Protein GI | 114561200 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | [TIGR01930] acetyl-CoA acetyltransferases
[TIGR02445] fatty oxidation complex, beta subunit FadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAG CTGTTATCGT AGACTGCATT CGCACCCCAA TGGGCCGTTC TAAGGCTGGG
GTATTTAGAA ATGTACGTGC AGAAACATTG TCTGCAGAAC TAATGAAAGC ACTAATGGTG
CGCAACCCAC AATTAGACCC AAACGACATT GAAGATGTTA TTTGGGGTTG TGTGCAACAA
ACTCTAGAGC AAGGCTTTAA CATTGCCCGT AATGCATCAT TGTTAGCTGG TATTCCTAAA
ACGGCTGGCG CAGTAACGGT AAACCGTTTA TGTGGTTCGT CAATGGACGC CCTTCATCAA
GCGGCTCGCG CCATTATGAC TGGCCAAGGT GATACCTTCA TTATTGGTGG TGTTGAGCAC
ATGGGTCATG TACCAATGAA CCACGGTGTT GATTTTCACC CAGGCCTTGC CAACCGTGTA
GCTAAAGCAT CTGGCATGAT GGGCTTAACT GCTGAAATGT TAGGTAAAAT GCACGGTATC
ACTCGTGAGC AACAAGATGC GTTTGCTGTA CGTTCTCACC AACGTGCCCA TGCTGCAACT
ATCGAAGGTC GCTTTGCTAA AGAAATTTGG GGCATTGAAG GCCACGATGC CAACGGCGCA
CTAATTAAAG TGATGACCGA CGAAGTCATT CGTCCAGAAA CGACACTAGA GTCACTTGCG
GGTTTACGCC CAGCATTCGA CCCAGTTAAC GGCACGGTGA CTGCAGGTAC ATCATCTGCA
TTATCTGACG GTGCTTCTGC AATGTTAGTG ATGGAAGAAT CTAAAGCACG TGCTTTAGGC
TTAACTATCC GAGCACGTAT TCGTTCAATG GCTGTTGCCG GTTGTGATGC TGCAATTATG
GGTTATGGTC CAGTACCTGC CACCAAAAAA GCATTAGCAC GCGCGGGCTT GTCGGTTGCC
GATTTAGACC TTATCGAATT AAACGAAGCG TTTGCTGCAC AGTCATTACC TTGTGTTAAA
GATCTTGGCT TGCAAGATGT TGTCGATGAA AAGATTAACC TGAACGGTGG CGCAATTGCA
TTGGGCCACC CACTAGGTTG TTCTGGCGCA CGTATATCGA CAACACTGAT CAACTTGATG
GAAGAAAAAG ATGCAACGCT TGGTCTTGCC ACCATGTGTA TCGGTTTAGG TCAAGGTATC
GCAACTGTAT TCGAACGCGT TTAA
|
|---|
| Protein sequence | MKQAVIVDCI RTPMGRSKAG VFRNVRAETL SAELMKALMV RNPQLDPNDI EDVIWGCVQQ
TLEQGFNIAR NASLLAGIPK TAGAVTVNRL CGSSMDALHQ AARAIMTGQG DTFIIGGVEH
MGHVPMNHGV DFHPGLANRV AKASGMMGLT AEMLGKMHGI TREQQDAFAV RSHQRAHAAT
IEGRFAKEIW GIEGHDANGA LIKVMTDEVI RPETTLESLA GLRPAFDPVN GTVTAGTSSA
LSDGASAMLV MEESKARALG LTIRARIRSM AVAGCDAAIM GYGPVPATKK ALARAGLSVA
DLDLIELNEA FAAQSLPCVK DLGLQDVVDE KINLNGGAIA LGHPLGCSGA RISTTLINLM
EEKDATLGLA TMCIGLGQGI ATVFERV
|
|---|
| |