| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_2662 |
|---|
| Symbol | |
|---|
| ID | 4268795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | + |
|---|
| Start bp | 3014489 |
|---|
| End bp | 3015346 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638127421 |
|---|
| Product | RNA polymerase, sigma 32 subunit, RpoH |
|---|
| Protein accession | YP_743492 |
|---|
| Protein GI | 114321809 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0000148114 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTG CACTGGTACC GCTGAAACAC GGCAACCTCC CCACTCCCGT CGGGAGCGAG
GAGGCGTATA TCCATGCGGT CAACCAGATC CCCGTGCTCA GCGCCGAGGA GGAGCACGAG
CTCGCCGAGC GCTACCGCCT GCAGGGCGAC CTGGACGCGG CCCGCGCACT GGTCCTGTCC
CACCTGCGCT TCGTGGTCCA CATCGCGCGC AGCTACCGCG GCTATGGCCT GCCGCTGGGC
GACATCATCC AGGAGGGCAA CGTGGGGCTG ATGAAGGCCG TCAAGCGCTT CGATCCCGCC
CAGGGGGTGC GCCTGGTCTC CTTCGCGGTG CACTGGATCC GCGCCGAGAT CCACGAGTAC
GTGCTGCGCA ACTGGCGCAT CGTCAAGGTG GCCACCACCA AGGCCCAGCG CAAGCTATTC
TTCAACCTGC GCAGCGGCCG CAAGCACCTG GGTTGGCTCA CCAGCGAGGA GGTGGACGCC
ATGGCCAGGG ACCTGGGGGT CAAACCCGAG ACGGTGCGCG AGATGGAAGC GCGCATGACC
GGCAACGACA CCACCTTCGA CCCGACCCCG GGCCAGGACG ACGAGGGCAT TCATGCCCCG
GTCGCCTACC TGGAGGACAA GCGCTACGAC CCGGCCACCG CCGTCGAGGA GGCGGACTGG
GAGCAGCACC GCGATCAGAA CCTGCACCAG GCCCTGGCAG GACTGGACGA GCGGAGCCAG
GACATCCTGG CCCGGCGCTG GCTGTCGGAG CGCAAGGCGA CGCTGAAGGA GCTGGCCGAG
CACTACCAGG TCTCGGCAGA GCGTATCCGG CAGTTGGAGA AAAACGCCAT GGGCCGGCTC
AAGACCGCCC TGGCCTGA
|
|---|
| Protein sequence | MTTALVPLKH GNLPTPVGSE EAYIHAVNQI PVLSAEEEHE LAERYRLQGD LDAARALVLS
HLRFVVHIAR SYRGYGLPLG DIIQEGNVGL MKAVKRFDPA QGVRLVSFAV HWIRAEIHEY
VLRNWRIVKV ATTKAQRKLF FNLRSGRKHL GWLTSEEVDA MARDLGVKPE TVREMEARMT
GNDTTFDPTP GQDDEGIHAP VAYLEDKRYD PATAVEEADW EQHRDQNLHQ ALAGLDERSQ
DILARRWLSE RKATLKELAE HYQVSAERIR QLEKNAMGRL KTALA
|
|---|
| |