| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mlg_2053 |
|---|
| Symbol | |
|---|
| ID | 4270187 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alkalilimnicola ehrlichii MLHE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008340 |
|---|
| Strand | - |
|---|
| Start bp | 2327416 |
|---|
| End bp | 2329560 |
|---|
| Gene Length | 2145 bp |
|---|
| Protein Length | 714 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638126809 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_742885 |
|---|
| Protein GI | 114321202 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.115114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCAGC GGCCCTTCGT CACCTGGGTC CTGACGGGCG CAGTTGCCGT CGCCGCCGCC
ATAGTGGTGC TCGCGGTCTA CAGCGTCACG CCCAGCGAGC CGGGGGGCAC CGATAACACC
GCGCTGGTGG CCAGCCTCGG GGTACTTGGG GTGGTGGCCG TCGGGCTGGT CAGCTGGCTC
TTGCTGGAGC GCCTGTTGAT GCGGCCCTCC CGGAAGCTCA GCCGCGGGGT CCGGGCGCTG
CTGGAATCCC GCCAGGCGAA CCAGGAGATC ATCCTCCCCC GGCGCCATGC CCTCGGGGAC
CTGCCGACCA CGGTGGAGTC ACTGGCCGAT GCGTTGCGCA AGTCGCGGCG AGAGACCCGC
AAGGCCATGC AATCGGCCAC CGCCGAACTC TCCGAGCAGA AGACCTGGCT GGAGACCATC
CTGCAGGGAC TCAGCGAAGG GGTGCTGGTC TGCAACCGCC AGCACCAGAT CATGCTCTAC
AACCGGGCGG CCGGGACTAT CCTCGGACAC CCGGAGGCCA TCGGTCTCGG CCGCCCCCTG
TTCAACGTGC TCTCCAGTCC GCCGGTGCAG CACACCCTGG AGCGCCTGGA GCGCCGCCAC
AAGGGCGATG TGGACCTGCC GACGGAACTC TCCGCCCCCT TCGTCTGCAC CAGCGCCGAT
GCCCAGCGCA TGTTCCATGG GCGCATGGCC TTGATTCAGA ACAGCCAGGG CCAGATTACC
GGTTATCTCA TCACCCTGGT GGACATCTCC AGCGATCTCA CCCGACTGGC CCAGGGTGAC
GCCGTGCGCC GGGCGCTCAC CCGCGACCTG CGTGGCGTGG TGGGCAACCT GCGCGCCGCC
GCGGAGACCG TGGCCAGCTA TCCGGACATG AAGCCGGAGG AGCGCCAGTC GTTCGATGCC
GTCATTCGCA GCGAGAGTGA GAAGCTGAGC GAGCAGATCG ACGAGCTGGC CCACCAGATC
CGGGGCTACA ACCTGGGGCG GTGGCCCATG GCCGACGTCT TCGTGGGGGA TCTGGTCAAC
TGCCTGCAGC AGCGGCTGAT GGACCTCCCG GACGTCCGGT TGACCCTGGT GGGGCTGCCG
CTCTGGGTCC ATGGCGACAG CCTTTCACTG ATGCTGGCGC TGGATTGCCT GGTGCGACAG
GTGCATGACC ATACCGGCGC GACGGCCTTC GATGTGGAGG CGTTGCTGGG CGATACCCGG
GTGTACGTGG ACATCAGCTG GCAGGGCGAG CCGATCACTA CCGGCGAGCT GAACCGCTGG
ATGGCGATCC CCTGCGGCGG CGATGAGGTG GGCGGCCAGC ACCTGGGGGA TATCCTGGAG
CGGCATGGCT GTGAGCCCTG GAGCCAGACG GGCAGGCGCG AGGGGCAGGC CTTGTTGCGC
TTGCCGCTGA TGATGTCCCG CCGGCCCCAG TTCATGGAGG AGGAGGAGCG GCTGCCGGCA
CGGCCCGAGT TCTACGACTT CGGGCTGATG CAGGAGTATG CCGGGGACGA GGCCCTGGCG
GCCCGGCGGC TGGCCGACCT GAGTTTCGTG GTGTTCGATT GCGAGATGAC CGGGCTGAAC
CCCGAGGGGG GCGATGAGAT CATCTCCATC GCCGGGGTCC GGGTGGTGAA CGGCCGGGTA
CTGACCGGTG AGACCTTTGA CCGAATCATC AATCCGGGAC GCCCCATCCC GCCTGGCTCC
GTGCGCTTCC ACGGCATCAC CGACGACGAT GTGCAGGACA AGCCGCCCAT CGAGGTGGTG
CTGCCCCAGT TTAAATCCTT CGTGGGGGAC GCCGTCCTGG TGGCGCACAA TGCCGCCTTC
GATATGAAGT TCATCAGCAT GAAGGAGCGC GAGGCCGGGG TGCGCTTCGA TAATCCGGTG
CTCGACACCC TGCTGCTCTC GGCCCTGCTG GACGGTGATG AGGAGGACCA CTCGCTGGAC
GCGCTGTGCG ACCGCTACGG CATTGCCATC ACCGGCCGTC ACACCGCTCT GGGCGATACC
CTGGCCACCG CCGAGCTGCT GGTTCGTATC ATTGAGCGGC TGGAGGCGCA GGGCTACCAG
ACGTTCGGCG AGGTGATGAA GGCCTCGCGG ATGGCCGCGG AACTCCGCCA CCGCTCCGCG
GTCTTCAGTG CACAGGGCGA GGGGATGGAG TCCTCCCGCA CCTGA
|
|---|
| Protein sequence | MRQRPFVTWV LTGAVAVAAA IVVLAVYSVT PSEPGGTDNT ALVASLGVLG VVAVGLVSWL
LLERLLMRPS RKLSRGVRAL LESRQANQEI ILPRRHALGD LPTTVESLAD ALRKSRRETR
KAMQSATAEL SEQKTWLETI LQGLSEGVLV CNRQHQIMLY NRAAGTILGH PEAIGLGRPL
FNVLSSPPVQ HTLERLERRH KGDVDLPTEL SAPFVCTSAD AQRMFHGRMA LIQNSQGQIT
GYLITLVDIS SDLTRLAQGD AVRRALTRDL RGVVGNLRAA AETVASYPDM KPEERQSFDA
VIRSESEKLS EQIDELAHQI RGYNLGRWPM ADVFVGDLVN CLQQRLMDLP DVRLTLVGLP
LWVHGDSLSL MLALDCLVRQ VHDHTGATAF DVEALLGDTR VYVDISWQGE PITTGELNRW
MAIPCGGDEV GGQHLGDILE RHGCEPWSQT GRREGQALLR LPLMMSRRPQ FMEEEERLPA
RPEFYDFGLM QEYAGDEALA ARRLADLSFV VFDCEMTGLN PEGGDEIISI AGVRVVNGRV
LTGETFDRII NPGRPIPPGS VRFHGITDDD VQDKPPIEVV LPQFKSFVGD AVLVAHNAAF
DMKFISMKER EAGVRFDNPV LDTLLLSALL DGDEEDHSLD ALCDRYGIAI TGRHTALGDT
LATAELLVRI IERLEAQGYQ TFGEVMKASR MAAELRHRSA VFSAQGEGME SSRT
|
|---|
| |